barSeed - Barley Seed Development Database

Probe CUST_5711_PI390587928

Source Contig U35_8169

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5711_PI390587928	Hv_44K_v2	CTAGTGCTGTACAAATCTTAAGCCTTGTCGGTTTTAATTATATATCAAGTTGACGTGCAT	901	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367301	1112	2e-24	1051 - 1110	100	60 / 60	plus	ABC00711 ABC26933
MLOC	MLOC_53441.1	1264	2e-24	169 - 228	100	60 / 60	minus	ABC26933
MLOC	MLOC_53441.2	1060	2e-24	18 - 77	100	60 / 60	minus	ABC26933
MLOC	MLOC_53441.3	980	9e-22	1 - 55	100	55 / 55	minus	ABC26933
JLOC1	JLOC1_34336.1	1224	8e-25	1042 - 1101	100	60 / 60	plus
Harvest21	ABC26933	260	3e-25	178 - 237	100	60 / 60	plus	ABC26933
Harvest35	U35_8169	984	3e-25	902 - 961	100	60 / 60	plus

Contig Sequence (984 bp)

>U35_8169 984 Hv_44K_v2
CTCACGAAAGCTGCCCCTGCAACCATAAACGCCACACCCAGAGAGAAGATGTGAGCGCGT
TAATGCCTAGGCTCGTACGCTACGACTACGAGCATCTCCATATCCACTGGTAGATATAAA
GCACACCGCGGAGGCCGACCGTCTCACTTCATCCCACTCCCTCCCATCCACCTGCAGCTA
GCTAAGCTAGCACCGGCCGCGCGCGCTGCGGATCATAATAAGCTTCCATGGAGCCGCCAC
CTTCTCCGCTGGGCGCCGGCGCCGTCTGCTGCATGTGCGGCGACCGCGGCCTGCCGCACG
AGCTGCTCCGCTGCAAGCTCTGCCGCGTCCGCCTGCAGCACAGATACTGCAGCGAGCTGT
ACCCGAGGGCCACGGCGTACAGGAGGTGCAACTGGTGCCTGAGGGAGCCCGCAGAAGCCC
ACGCCCAACCCCACGCTCAACCGGTGGCTAGCAAGAAGGCGGAGAAGCGGAGGATGGTGG
CGTCGACGGAGACGTCGACCTCCGACGAGGAGGAGCGGCGGCACCACAACGAGGCCGGAT
GCGCCACTGCAACGAGGTCGAGGAGATCGCCCGCGGAGGTCGGTAAGCCGGTCAAGAAGC
CCAAGGTCGACGAGAGGCCGCCGCTGCCGCCGTCGCCAGGCGCGGCAGCGAAGGGGAACA
GCGGCGACAAGAAGCCGATGCAGGCCGGGAAGCTGGCGCGGCCGGGTAGGGTCAAGGTGA
GGAGGTACAAGCTCCTGGCAGAGGTGATTAGCTGCTAGCCAGGATCATAGAATCAAAAGG
GGAAGTAGCCAAATAACTAGCTAGGCACCGTCGACATTGGTGTCGATCTAGCATGTAAAT
ATCGTTTGCCCGTCTTGTACGGGGTTTTCCTCTCTTTTTGGGGAGAGAGTCTACTACCGT
GCTAGTGCTGTACAAATCTTAAGCCTTGTCGGTTTTAATTATATATCAAGTTGACGTGCA
TAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_8169 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g11820.1	206	2e-62
Arabidopsis v10	None