barSeed - Barley Seed Development Database

Probe CUST_570_PI390587928

Source Contig U35_20084

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_570_PI390587928	Hv_44K_v2	TCGAAATCTGAATTAATGCCCTTGTGAGCACAGCTTTTGTCCAATTTATGCACGTGTATT	657	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.059	1.294	1.080	1.031	0.605	0.589
Raw	2045.927	3904.730	2867.610	4231.687	881.964	930.951

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370365	768	2e-24	686 - 745	100	60 / 60	plus	ABC13647
JLOC1	JLOC1_24673.1	698	8e-25	423 - 482	100	60 / 60	plus
Harvest21	ABC13647	720	3e-25	658 - 717	100	60 / 60	plus	ABC13647
Harvest35	U35_20084	720	3e-25	658 - 717	100	60 / 60	plus

Contig Sequence (720 bp)

>U35_20084 720 Hv_44K_v2
CGCCGACTCTGCCGTCTCCCTCGCCTCCTCCTCCCCCTCGCCGCCGCCCCCAAGCCCCAG
CCCCGCCTCCCCGCCCTAAACCCAAGCCCCGCCGCGCGCCTCCGCCCCTCCTCCCCGACG
CCGACGCTCCCCACCTTCCCTCGCCTCTTCTCCTCGTCGTCCGCAGGCGATTCCAGCAGC
ATGGTGGTCGTCGACTCGGCGGACTCGTTCGAGGACATCCACTCCAAGGTGCAAGTGGAG
AAGCTCCCCGCCGTCTTCTACTACACGGCGGTCTGGTGCGGCCCGTGTCGGGCGATGGCA
CCTGTGATCGAGAAGATGAGCAGGCAGTACCCCAAGATACCTGTCTACAAGGTCGACATC
GACATTGAGGGGCTTGGGAACAGACTTAGTAATCTGAAAATATGCTCTATTCCAACTTTC
CACTTCTATCACAAAGGCGAGAAGAGCAGCGAAGTGGTTGGTGCTGACGTGAAGAAGCTT
GAAGCTGCCATGGAAAGTCTTCACAAGCAACAGTGACTGACTTGGACGGGGGGACAGTTC
TTTTGCATGAAGAGTTGAATACGCTGTAATGTTGTGATTTGAATCGGCGTTTTTGACTTG
GAAACTTGTGCCTTTCGACCTTGTTTAGATATCTCGATACATCTTGTCTGAAAAACATCG
AAATCTGAATTAATGCCCTTGTGAGCACAGCTTTTGTCCAATTTATGCACGTGTATTTAG

Homology of Contig U35_20084 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g32020.1	177	3e-58
Arabidopsis v10	None