barSeed - Barley Seed Development Database

Probe CUST_5707_PI390587928

Source Contig U35_8173

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5707_PI390587928	Hv_44K_v2	CACCTTACTTTGTAACTGATCAGAAGACTCAGAAATGTGAGTTGAAAAATCCTTTGATTC	760	GeneList: skyblue3 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.322	1.060	1.241	0.756	0.375	0.448
Raw	68.236	76.370	86.886	76.842	14.805	18.752

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67497.3	2302	2e-24	1299 - 1358	100	60 / 60	minus	ABC39302
MLOC	MLOC_67497.1	2473	2e-24	1423 - 1482	100	60 / 60	minus	ABC39302
MLOC	MLOC_67497.2	2304	2e-24	1296 - 1355	100	60 / 60	minus	ABC39302
JLOC1	JLOC1_44574.1	2469	8e-25	945 - 1004	100	60 / 60	plus
Harvest21	ABC20171	853	3e-25	761 - 820	100	60 / 60	plus
Harvest35	U35_8173	853	3e-25	761 - 820	100	60 / 60	plus

Contig Sequence (853 bp)

>U35_8173 853 Hv_44K_v2
GCGACTCTCGCCAAACCCAACCCCCACACACACGAACACGCGGCCATGTACCGGGCGGCG
GCGGCGGCCATTTCGCGGTCCTCCTCCTCGGCGCTGCGCAGGCATCTCGCGCGCGGCGGC
GGCGGCGGCGGCGGGGAGCAGCGGCAGTGGGCGCGCGGGTATGCGGCGAAGGAGGTCACC
TTCGGCGTCGGCGCGCGCGCCGCCATGCTGCGGGGCGTCAACGACCTCGCCGACGCCGTC
AAGGTCACCATGGGCCCCAAGGGCCGCAATGTGGTTATCGAGAGACCGAACAGATCCCCC
AAGGTCACCAAGGACGGGGTCACGGTTGCCAAGAGCATAGAGTTCGAGGACAGCGCCAAG
AACGTTGGGGCGAGCCTGGTGAAGCAGGTCGCTGATGCCACTAACAAGGCCGCAGGAGAT
GGTACCACTTGTGCAACTGTGCTTACACAGGCAATTCTCACGGAAGGATGCAAGGCTGTG
GCAGCAGGGGTCAATGTTATGGATTTGCGGAATGGCATAAACAAGGCTATAAGCGCTGTC
ACTGCTCACCTTAAAAGTAAAGCATGGATGATTGATTCCCCAGATGAAATAAATCAGGTA
GCTACAATTTCCGCAAATGGCGAAAAGGAAATTGGAGATCTGATATCAAAAGCTATGGGA
ATAGTTGGAAAGGATGGCGTCATTACTATTGCTGATGGCAAAACGTTGGATAATGAGCTT
GAAGCAGTCCAGGGAATGAAGTTGACTAGAGGCTACATATCACCTTACTTTGTAACTGAT
CAGAAGACTCAGAAATGTGAGTTGAAAAATCCTTTGATTCTTATTCACGACAAGAAAATC
TCAAGCATGAATT

Homology of Contig U35_8173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46290.1	582	4e-145	protein\|T-complex protein, putative, expressed
Brachypodium v1_2	Bradi2g18260.1	577	2e-147
Arabidopsis v10	AT3G13860.1	572	3e-118	\| Symbols: HSP60-3A \| heat shock protein 60-3A \| chr3:4561704-4565133 REVERSE LENGTH=572