barSeed - Barley Seed Development Database

Probe CUST_5706_PI390587928

Source Contig U35_8174

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5706_PI390587928	Hv_44K_v2	ATTTGACATCAAAGAGTGACGTCTATAGCTTTGGTGTGGTGCTGCTTGAGATGATGTCGG	208	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66562.2	2297	2e-24	1505 - 1564	100	60 / 60	plus	ABC17814
MLOC	MLOC_66562.1	2437	2e-24	748 - 807	100	60 / 60	minus	ABC17814
MLOC	MLOC_66562.3	2363	2e-24	729 - 788	100	60 / 60	minus	ABC17814
JLOC1	JLOC1_43877.1	2380	8e-25	1550 - 1609	100	60 / 60	plus
Harvest21	ABC17814	859	3e-25	209 - 268	100	60 / 60	plus	ABC17814
Harvest35	U35_8174	859	3e-25	209 - 268	100	60 / 60	plus

Contig Sequence (859 bp)

>U35_8174 859 Hv_44K_v2
CAGGACTTTCCTTCCTTCTGAGGAAGCAGAAAGACAGTCATTTATCGTGATTTTAAAACA
TCTAATATACTGCTAGATTCGGAATACAATGCAAAGCTCTCAGATTTTGGGCTTGCCAAA
GATGGTCCTGTAGGTGACAAGACTCATGTGTCTACTCGAGTAATGGGAACCTATGGTTAT
GCAGCTCCAGAGTATGTCATGACAGGCCATTTGACATCAAAGAGTGACGTCTATAGCTTT
GGTGTGGTGCTGCTTGAGATGATGTCGGGACGAAGGTCAATGGACAAGAACCGCCCAAAT
GGCGAGCACAACCTTGTGGAGTGGGCGCGCCCCCTCCTAGGGGAGAGACAACGGTTCTAC
AAGTTAGTCGACCCTCGCCTGGAGGGGAATTTCTCGGTCAAAGGTGCCCAGAAGGCTGCA
CAATTGGCACGCGCATGCCTGAGCCGGGACCCCAAAGCCCGGCCTCTGATGAGCCAAGTG
GTTGAAGCTCTGAAGCCACTGCTTAACCTCAAGGACATGGCCAGCTCCTCGTACTTCTAC
CAGACGATGCAAGCCGAGAGGATGGCGCATTCGAGCAGCATGAACGGCAGGAACAGCCAC
AGCCTCAAGGTGCACGGCTCTTTTGCCCGCGCAAACGGGCAGCAGCCGATGAGGAGCATG
TCTGATGGCCCGCGCGCGTCCCCGTTTCGCTACTCACCGAAGCCGAACGTGAAATAACAA
CCAAAGCTGTGCGTCGCGTCGTAGTCCTGGTCGAACCTAGAGTCTCTCAGGATCATTCTG
GGGGTGGGGTGGAACTTGGTGGTCGGGGCGGGTGAACATTGTTGTGCGACCTGAATTGAT
GTGTGTCTGTCTGTCGTGT

Homology of Contig U35_8174 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19700.1	513	6e-149	protein\|protein kinase domain containing protein, expressed
Brachypodium v1_2	Bradi4g28627.1	496	5e-153
Arabidopsis v10	AT5G15080.1	493	2e-103	Protein kinase superfamily protein \| chr5:4886414-4888555 FORWARD LENGTH=493