barSeed - Barley Seed Development Database

Probe CUST_5702_PI390587928

Source Contig U35_8178

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5702_PI390587928	Hv_44K_v2	GGAAAAATCATGTCGATATCGATTAAAGGGTAATAATTTTCAGGCACCGTCTATTTTCAG	1248	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2059.1	1469	9e-22	1405 - 1466	97	60 / 62	plus	ABC16818
MLOC	MLOC_2059.2	1503	9e-22	1439 - 1500	97	60 / 62	plus	ABC16818
Harvest21	ABC16818	1327	3e-25	1249 - 1308	100	60 / 60	plus	ABC16818
Harvest35	U35_8178	1327	3e-25	1249 - 1308	100	60 / 60	plus

Contig Sequence (1327 bp)

>U35_8178 1327 Hv_44K_v2
GGCGTTCGTCCAGCTGTAGCTGCAGTACGATCCAGGAAGCGGAGGAGAGGGAGCTGCGAT
GGTGAAGGACACCGCGTACTACGACACCTTGGGGGTCAGCACCGACGCCTCCGCCGCCGA
GATCAAGAAGGCGTATTACCTCAAGGCCAAGCTGGTTCATCCGGATAAGAATCCCGGGAA
CCCTGATGCGGCGAGGAAGTTTCAGGAATTAGGTGAGGCCTATCAAGTCCTAAGTGATCC
TGCGAAAAGGGATTCTTATGATAAGCGTGGAAAAGAAGGTCTATCCCAGGATAACATGAT
TGACCCGACTACTGTCTTTGGGATGCTTTTTGGGAGCGACTATTTTGAAGATTATGTTGG
TCAGCTTGCACTGGCATCCGTGGCTTCGGTGGAGATCGAGGAAGATGCGGACACTCCGGA
GGCAAGGGCAAGGGCTCAAGAGAAAATAAAGGCCTTGCAAACGGAAAGAGAGCAGAAACT
TATTCTGAGCCTTACAAATCGAATTCAACCATACGTCGATGGAAAACACAAGGAATTTGG
TGATTGGGCAAGTGCAGAAGCTGAACGCTTGTCTCAAGCTGCTTTTGGTGAGGCTATGCT
TCACACCATTGGCTACATATATGTTCGACAAGCAGCAAGAGAACTTGGAAAAAGTAAAAT
GTATATGGGCGTGCCATTCATTGCTGAGTGGGTAAGAGACAAGGGCCACCATGTAAAGTC
ACAGGTTAATGCAGCTGCAGGTGCAATTGCCCTGATACAATTGCAAGAGGGGATGAAAAA
GATTGAGGATGGTGACAACAAGGAAGAGCAGCTACTGAAGAGTATTGAGGAGAAAAAGGA
TGCCATGCTCAATTCTTTGTGGAAAATTAATGTTGTTGACATTGAGTCAACGCTATGGCG
TGTCTGTCGAGCATTTTTGAGAGAGAATACTGTCTCCAAAGATGTTCTGACGTCGCGAGC
AAAAGGATTGAAAAAGCTGGGGACAATATTCCAAGGCGCGAAATCACCCTACCATCGCGA
GAACAGCTTGCGTGTTGAATCTCGCACGGTGGAAGAGACGCCGTCGCACTGATCGGGATG
TATCCTGTGCCACCAGAGACATCCCACGGCTGAGCTTTTCTTCAGGGGATCGTCTAGAGT
CCATGGTGGTTCTTTCTTGTGATCTGTATAAACTCGAGGCATCATTCAGGACATCTTGCT
GTGGTAGTACTATTTGTTGCCCTGCAACATGTTGATATCGATGTTCTTGGAAAAATCATG
TCGATATCGATTAAAGGGTAATAATTTTCAGGCACCGTCTATTTTCAGAATAAAAAAAAA
AAAAAAA

Homology of Contig U35_8178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g46620.1	339	5e-174	protein\|chaperone protein dnaJ 10, putative, expressed
Brachypodium v1_2	Bradi2g47570.1	382	0.0
Arabidopsis v10	AT4G39150.1	345	3e-142	DNAJ heat shock N-terminal domain-containing protein \| chr4:18233651-18235740 REVERSE LENGTH=345