barSeed - Barley Seed Development Database

Probe CUST_56_PI415269222

Source Contig TA33144_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_56_PI415269222	Hv_44K_v2	TATTTCCGGGGTTTGTTCTACGATACTGCGAATGATCCTGAGGGTGGTTACTATGCAAGA	435	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354933	1667	2e-24	813 - 872	100	60 / 60	plus	ABC03965 ABC03966 ABC05919
MLOC	MLOC_61533.1	1772	2e-24	821 - 880	100	60 / 60	minus	ABC03965 ABC03966 ABC05919
JLOC1	JLOC1_40215.1	1993	8e-25	892 - 951	100	60 / 60	plus
Harvest21	ABC03966	1315	3e-25	1011 - 1070	100	60 / 60	minus	ABC03966
Harvest21	ABC03964	1614	3e-25	846 - 905	100	60 / 60	plus
Harvest35	U35_15660	2182	3e-25	846 - 905	100	60 / 60	plus

Contig Sequence (947 bp)

>TA33144_4513 947 Hv_44K_v2
CGGCACGAGGGGTTCCTGCTGTCGAGCGCGATCCGGACCATGAACCCGGAGGAGGCCGAC
TGGTTCTACACTCCGGTGTACACCACCTGTGACCTTACTCCGTGGGGCCATCCGTTGCCC
TTCAAGTCTCCGCGGATCATGAGGAGTGCAGTTCAGTTTATCTCATCACACTGGCCCTAT
TGGAACCGGACAGCAGGTGCTGATCATTTCTTCGTCGTGCCGCATGACTTTGGGGCATGC
TTCCATTATCAGGAAGAAAAGGCGATTGAACGGGGGATCCTTCCATTGCTTCGCCGCGCT
ACACTTGTCCAGACATTTGGGCAGAAGGATCATGTCTGCCTAAAGGAAGGCTCAATCAAC
ATCCCACCATATGCTCCTCCCCAGAAAATGAAAACTCACCTTGTTCCCCCGGAAACCCCG
CGGTCCATCTTTGTGTATTTCCGGGGTTTGTTCTACGATACTGCGAATGATCCTGAGGGT
GGTTACTATGCAAGAGGCGCCCGTGCATCGGTGTGGGAGAACTTCAAGAACAACCCTCTG
TTCGACATCTCGACGGACCACCCACCCACCTACTACGAGGACATGCAGCGCGCCATTTTC
TGTCTGTGCCCGCTTGGGTGGGCGCCATGGAGCCCCCGCCTCGTGGAGGCGGTGGTGTTC
GGGTGCATCCCGGTGATCATCGCGGACGACATCGTCCTGCCTTTTGCGGATGCCATCCCG
TGGGACGAGATCGGCGTGTTCGTGGCGGAGGACGACGTCCCGAAACTTGACACCATCCTG
ACGTCCATCCCGATGGAGGTGATCCTGCGGAAGCAGAGGCTGCTGGCGAACCCGTCGATG
AAGCAGGCCATGCTGTTCCCGCAACACGCGCACGGCCCGGACACGCCTTACACCATATCC
TGAACGGTCTGGCGCGGAAGCTCCCGCACAGCAAGAGCGTGTACCTT

Homology of Contig TA33144_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g70190.1	416	protein\|exostosin family domain containing protein, expressed
Brachypodium v1_2	Bradi2g59400.1	412
Arabidopsis v10	AT1G27440.1	412	\| Symbols: GUT2, IRX10, ATGUT1 \| Exostosin family protein \| chr1:9529265-9531213 REVERSE LENGTH=412