barSeed - Barley Seed Development Database

Probe CUST_569_PI390587928

Source Contig U35_20085

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_569_PI390587928	Hv_44K_v2	TCTGAAAATATGCTCTATTCCAACTTTCCACTTCTATCACAAAGGCGAGAAGAGCAGCGA	419	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370365	768	2e-24	421 - 480	100	60 / 60	plus	ABC13647
MLOC	MLOC_38008.1	955	2e-24	221 - 280	100	60 / 60	minus	ABC13647
JLOC1	JLOC1_24673.1	698	8e-25	170 - 229	100	60 / 60	plus
Harvest21	ABC13647	720	3e-25	393 - 452	100	60 / 60	plus	ABC13647
Harvest35	U35_20085	479	3e-25	420 - 479	100	60 / 60	plus
Harvest35	U35_20084	720	3e-25	393 - 452	100	60 / 60	plus

Contig Sequence (479 bp)

>U35_20085 479 Hv_44K_v2
GGCATGGCTCGCCGACTCTGCCGTCTCCCTCGCCTCCTCCTCCCCCTCGCCGCCGCCCCC
AAGCCCCAGCCCCGCCTCCCCGCCATCCCCGCCCTAAACCCAAGCCCCGCCGCGCGCCTC
CGCCCCTCCTCCTCCTCCTCCCCGACGCCGACGCTCCCCACCTTCCCTCGCCTCTTCTCC
TCGTCGTCCGCAGGCGATTCCAGCAGCATGGTGGTCGTCGACTCGGCGGACTCGTTCGAG
GACATCCACTCCAAGGTGCAAGTGGAGAAGCTCCCCGCCGTCTTCTACTACACGGCGGTC
TGGTGCGGCCCGTGTCGGGCGATGGCACCTGTGATCGAGAAGATGAGCAGGCAGTACCCC
AAGATACCTGTCTACAAGGTCGACATCGACATTGAGGGGCTTGGGAACAGACTTAGTAAT
CTGAAAATATGCTCTATTCCAACTTTCCACTTCTATCACAAAGGCGAGAAGAGCAGCGA

Homology of Contig U35_20085 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None