barSeed - Barley Seed Development Database

Probe CUST_5699_PI390587928

Source Contig U35_8181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5699_PI390587928	Hv_44K_v2	AAGAAAGGAATCGGTAATTTAAGTGTTGAAGACTTCTTGGACCGGTCCCAGAATTTCGCG	607	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358213	1868	2e-24	1058 - 1117	100	60 / 60	plus	ABC40655
MLOC	MLOC_18137.5	1940	2e-24	856 - 915	100	60 / 60	minus	ABC40655
MLOC	MLOC_18137.10	1931	2e-24	823 - 882	100	60 / 60	minus	ABC40655
MLOC	MLOC_18137.1	2034	2e-24	882 - 941	100	60 / 60	minus	ABC40655
MLOC	MLOC_18137.2	2007	2e-24	882 - 941	100	60 / 60	minus	ABC40655
MLOC	MLOC_18137.7	2097	2e-24	843 - 902	100	60 / 60	minus	ABC40655
MLOC	MLOC_18137.8	2102	2e-24	843 - 902	100	60 / 60	minus	ABC40655
MLOC	MLOC_18137.3	2029	2e-24	882 - 941	100	60 / 60	minus	ABC40655
JLOC1	JLOC1_12542.8	2117	8e-25	1126 - 1185	100	60 / 60	plus
JLOC1	JLOC1_12542.7	2085	8e-25	1094 - 1153	100	60 / 60	plus
JLOC1	JLOC1_12542.6	2051	8e-25	1060 - 1119	100	60 / 60	plus
JLOC1	JLOC1_12542.5	2029	8e-25	1038 - 1097	100	60 / 60	plus
JLOC1	JLOC1_12542.1	1999	8e-25	1008 - 1067	100	60 / 60	plus
Harvest21	ABC18120	459	3e-25	353 - 412	100	60 / 60	plus
Harvest35	U35_8181	716	3e-25	608 - 667	100	60 / 60	plus

Contig Sequence (716 bp)

>U35_8181 716 Hv_44K_v2
TCAACTTCAGTGCCGAGGTAGAGGATCAGTGTCCTCGCAAGAAAAAGATGAAAGTTGTCA
GGAAATTCGCCAAAGTTCTATACTCTCTTCAAAGGGACGGAATTTACTGTGGAGTTTTAC
CCGTTGTAAGTGCTAAGGTGCCTATTGTGAATGTTATTGATCGGGGGACTGGCATCGAGT
GTGATATTACAGTTGAAAACAAAGATGGCATGACAAGATCGATGATCGTCAAATTGATTT
CTTCACTTGATGAAAGGTTTCAGATACTAAGTTACTTGGTTAAGACCTGGGCTAAGATAC
ATGATGTGAATAGCCCGACAGCGCAGACAATGAGCTCGATGTCAATCATTTCCTTGGTTG
CTTTCCATTTGCGCAGACCCGCCATCCTCCAATATTGCCCGCGTTCTCTGCCTTATTAAA
AGATGGTTCAGATTTCGCAAGTGTTGAGAAGAACATCTTGCTCTTTAAGGGGTTTGGGAG
CACAAATAAAGAATCGGTAGCTGAACTTTTTGTAACATTAATGAGTAAGCTACTATCAGT
GGAAAGTTTATGGGAGCATGGGCTCTGCGCTAGCAATTTCGAAGCATCATGGATCTCCAA
GACCTGGAAGAAAGGAATCGGTAATTTAAGTGTTGAAGACTTCTTGGACCGGTCCCAGAA
TTTCGCGAGGGCGGTAGGGAAGACGCAGATGCAGAAGATCTGCACATGCCTTCTAG

Homology of Contig U35_8181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44560.1	581	3e-88	protein\|expressed protein
Brachypodium v1_2	Bradi4g38757.1	552	6e-107
Arabidopsis v10	AT3G45750.1	682	5e-51	Nucleotidyltransferase family protein \| chr3:16793855-16797380 REVERSE LENGTH=682