barSeed - Barley Seed Development Database

Probe CUST_5698_PI390587928

Source Contig U35_8182

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5698_PI390587928	Hv_44K_v2	ATCTCAAATTTACTTGTGGATTTGGCAATTGCAGTGTACCATGCTCGTTTGTCATAAAAG	810	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.251	1.396	0.967	0.891	0.327	0.372
Raw	64.315	112.782	70.296	103.334	12.628	16.275

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58493.2	3259	7e-23	3150 - 3209	98	59 / 60	plus	ABC17093 ABC17276
JLOC1	JLOC1_38010.2	3290	4e-23	3182 - 3241	98	59 / 60	plus
JLOC1	JLOC1_38010.1	3251	4e-23	3143 - 3202	98	59 / 60	plus
Harvest21	ABC17093	870	3e-25	811 - 870	100	60 / 60	plus	ABC17093
Harvest35	U35_8182	870	3e-25	811 - 870	100	60 / 60	plus

Contig Sequence (870 bp)

>U35_8182 870 Hv_44K_v2
GTTGTTTTATGGCAAGATAAAAATCTTAAAGGCGCTGAACTACTGAAGGCAACTGATGAC
TCTTTGAAGAGTGTTAACCTATTCCGTGGCGGTGTCGGCGATAAGCAAGTGGGGAAGTAC
AGTGGGGGCATGAAACGGAGGCTTAGTGTTGCAATCTCCTTAATTGGAGACCCCAAAGTT
GTTTTCATGGACGAGCCAAGCACTGGGCTAGATCCAGCATCAAGAAATAACCTGTGGAGT
GTTGTGAAGGAAGCAAAGAAAAACCGTGCCATTATTCTTACAACACATTCAATGGAAGAG
GCAGAGGTACTATGTGATAGACTGGGTATTTTTGTTGATGGTGGTTTCCAATGCATTGGA
CATCCGAAAGAGCTGAAAGCGAGATATGGAGGCACCTACGTGTTCACAATGACAACATCT
TCGGAACATGAGCAGGAGGTTGAACAGCTAGTTCGCCGTTTGTCGCCGAATGCGAACAGG
ATATATCACATATCTGGAACACAGAAATTTGAGCTGCCAAAGCAGGAGGTGAAGATAGCT
GACGTTTTCCATGAAGTTGAGAGTGCAAAAGGCCGTTTTAACATACACGCTTGGGGCCTT
GCTGATACCACCTTGGAGGATGTCTTCATCAAGGTTGCCAAGGGAGCACAAGTTTTCAAC
TCGTAACTAGTATACTGGATTTGTAGGTCGTTATTCTTTTTTTTCGTGTGTGAAATATAT
GGTGTATGAGACTTGCTTGAACTTCCCTATACATAAGTTTTGGTTAGTGTGACACTAGAG
GTGTAAGTTTAGTATTGTGTAAAGCTGTATATCTCAAATTTACTTGTGGATTTGGCAATT
GCAGTGTACCATGCTCGTTTGTCATAAAAG

Homology of Contig U35_8182 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g30770.1	958	4e-127	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi3g35390.1	955	4e-133
Arabidopsis v10	AT3G47780.1	935	5e-110	\| Symbols: ATATH6, ATH6 \| ABC2 homolog 6 \| chr3:17624500-17628972 FORWARD LENGTH=935