barSeed - Barley Seed Development Database

Probe CUST_5693_PI390587928

Source Contig U35_8187

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5693_PI390587928	Hv_44K_v2	ATCACATCACGATCACGATCAAGCAGTCACGGCCCATGATGCACCGTGCCACGATCATCG	21	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58449.1	1816	2e-24	1550 - 1609	100	60 / 60	minus	ABC22260
JLOC1	JLOC1_37975.1	1773	8e-25	1614 - 1673	100	60 / 60	minus
Harvest35	U35_8187	601	3e-25	22 - 81	100	60 / 60	plus

Contig Sequence (601 bp)

>U35_8187 601 Hv_44K_v2
CACTACAGTGCTCCATCCACTATCACATCACGATCACGATCAAGCAGTCACGGCCCATGA
TGCACCGTGCCACGATCATCGCGCTGATCGGCTGCCTTCTCGCCGGCGGCGGGGTTCGAG
CGCAGCAGCAGGAGCAGCAGAGGTTTGACTACCCGGCGGCGAGGGCGCCCACGACCTGGG
CCAACACGGACGCCGGCCTGCCGCACCACGTCGTCTACACCGACGGCTCCGTGGCGCGCG
TCGCCCTGCTGCGCCTCAACCCGGCCGGCTTCGGCCCCTCCTTCGCCTTCGGCTTCTTCT
GCACCAGCAGCCACGGCGCGGCCCCGTGCGCCGGCTTCCTCCTCGGCGTCGCCGTCGTCT
ACTGCAACAGCGGCGCGCTCATCACCTCCGTCACGACCGGCGTCCCGCAGGTCGTCTGGT
CCGCCAACCGCGCCAGCCCCGTGGGCGAGGGCGCCTCCGCGGAGCTCACGCCTGAGGGTG
AGCTGGTGCTCAGATCGGCCAACGGGTCGGCGGTGTGGTCCGCCGGCGCCAAGGGCCGGT
CCGTCGCCGGGGTGACCATCGGCAGCGACGGCAACCTGGTGCTGTTCGACGGGCTCAACG
C

Homology of Contig U35_8187 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g72810.1	464	7e-66	protein\|secreted glycoprotein, putative, expressed
Brachypodium v1_2	None
Arabidopsis v10	None