barSeed - Barley Seed Development Database

Probe CUST_5691_PI390587928

Source Contig U35_8189

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5691_PI390587928	Hv_44K_v2	TGGTTCGAGAGCAAAACACGCGGACTCGTGAAGAACATCCTCTCAGAGCACGACTGCGAC	520	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.505	0.585	2.242	1.841	0.932	0.994
Raw	41.607	80.975	246.668	317.306	57.579	68.929

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66958.1	1563	2e-24	926 - 985	100	60 / 60	minus	None
JLOC1	JLOC1_44174.1	1551	8e-25	914 - 973	100	60 / 60	minus
Harvest21	ABC17724	643	3e-25	521 - 580	100	60 / 60	plus
Harvest35	U35_8189	644	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (644 bp)

>U35_8189 644 Hv_44K_v2
GGCAATTCAGTCCAGAAGATCGGACTACTGGTTTGCTATCCCCCATTCCCCAAAAAAGCT
GCTATCCATCTTCATTCCCTCCGCGTCAATGGTAGACCAGGCAGTCGCCGACGCCGTGAG
GGACCAGGCCGCGCTCTGCCTGCTCCTCCTCCGCCACCTCGGAAGCCTCAACGAGGGGAT
GCTCACGCCCACCACCAACCTCGCCTTCTCACCGATCTCCTTCCACGCAGTGCTCTCCCT
CCTGGCCGCGGGTGCTTCCGGCGCCACGCGCGACCAGATCCTCACCTTCCTCGGCCCCGC
TGGCGCAGAGGCACACGCCGCGCTCGCCTCCATGGTCGCATCCTTCGTCCTCGCCGGCCG
GGGGTTGGCCCAGGCCCGCAGCGCCACGGGCGTCTGGGTCGACGCCTCGCTACGCCTCAG
TCCTACCTTCGCCGACACGGCCGCCGCTGTCTACAAGGCCGACGCGCGATCGGTGGACTT
CAGCAACAGGCCCAGAGACGCGACGGCTGAGATCAATGAGTGGTTCGAGAGCAAAACACG
CGGACTCGTGAAGAACATCCTCTCAGAGCACGACTGCGACGGCTCCACGTAGCTTGTCGT
CGGCAACTCGGTCTTCTTCAGCGGCCACTGGAACGCCCCCTTCT

Homology of Contig U35_8189 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None