barSeed - Barley Seed Development Database

Probe CUST_5690_PI390587928

Source Contig U35_8190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5690_PI390587928	Hv_44K_v2	TTTCTTCTGAGGGTGATATGGAAAAGGCTGAGGAGGCCTTGAAGACACAGAAGCAAGAAT	914	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.868	0.783	1.752	1.943	1.401	0.849
Raw	23.625	28.832	65.435	115.274	28.459	19.270

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53880.2	3460	2e-24	2029 - 2088	100	60 / 60	plus	ABC20231
MLOC	MLOC_53880.3	2283	2e-24	974 - 1033	100	60 / 60	plus	ABC20231
MLOC	MLOC_53880.1	3794	2e-24	2372 - 2431	100	60 / 60	plus	ABC20231
JLOC1	JLOC1_34643.1	2453	8e-25	1000 - 1059	100	60 / 60	plus
Harvest21	ABC16704	1096	3e-25	915 - 974	100	60 / 60	plus
Harvest35	U35_8190	990	3e-25	915 - 974	100	60 / 60	plus

Contig Sequence (990 bp)

>U35_8190 990 Hv_44K_v2
CGCTCGCACCCTCGGCTACCCCCCTCGCCCCTCCCCCCACCCGCGTCAACCAAACCCTAA
CTCGCCCCACCCTCCAAATCCCTCCCCGCCCCTCTCGATCTCGCCGCCGCCGCCGCAGCC
AAAACCCTACGCCCCTCCCTCCGCCGCCTCCGGTAAAACAACCTTTCGGCTATTTGTTTC
CGAAATGCCGTCTGCGTCCAAATCCAAGGCAAAGGATAGGGCAGCTGCTTTTAAAGCAGC
AAAAGAGCAACCTAAGGTGGCTGTCAAGCCAGTGGGAAATGGCACCGGTGCTAGTACTTA
CAACAACCTCTCTGGAAAATTTCATCTTTTGGAGCCATCATCCTCTTTGCTGGGTAGCCA
GGGTAACGAAAAATTGAGGAATACAGATGAAATAGACGAGCATTCTCGTAGCTCGCATGG
TACAGGGGATTTTGATTGCGCCTCAAATAATGGCAGCTGTTCTGGCGAGTCAGAAGATAC
AAAGGAAAAATCAACCGGCACAGCGCCTCGAGTGGACTCTATTCCTGGATGTGATCTTGA
TAAACGTGAGAAGATCAGACAGAAGAATGAGAAGAAGCATCAAAGGCAAAAGGAGAGGCG
TGCCCAGGAATTGCACGAGCGTTGCAAAGGATACCTAATGTCCAGAAAGTTGGAGACACT
TGCTCAGAAGCTTGTTGCAATGGGTTTCTCATCAGACCAGGCAACGATGGCCCTTATACA
TAATGAGGGCTGTCTTGAGGAGTCTGTTGCCTGGCTATGTAATTTTGATGGCAGTGATGA
AACGAAGCAGCAAGTTGCAGCAGCTCAACAGTCTGCAGCTAATTTGAAGATTGATATAAC
TGATGAGCTCGCAAAGATTGTGATCCTGGAGGCTAAATTTAAGTGTACAAAGCAAGAGGT
AGAAAGAGCTATTGTTTCTTCTGAGGGTGATATGGAAAAGGCTGAGGAGGCCTTGAAGAC
ACAGAAGCAAGAATCAGCAACAACCGCATC

Homology of Contig U35_8190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g33850.1	618	5e-145	protein\|UBA/TS-N domain containing protein, expressed
Brachypodium v1_2	Bradi2g25540.2	579	7e-152
Arabidopsis v10	AT5G12120.1	619	5e-64	Ubiquitin-associated/translation elongation factor EF1B protein \| chr5:3916229-3918088 REVERSE LENGTH=619