barSeed - Barley Seed Development Database

Probe CUST_5689_PI390587928

Source Contig U35_8193

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5689_PI390587928	Hv_44K_v2	CCGCTTGGGACATCGTATAATTTTTCCAACTGTAATGATATATGCTTGTAATTTACATGC	798	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.960	1.693	0.889	1.136	0.693	0.737
Raw	82.748	105.530	51.812	100.421	21.819	25.473

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10365.2	694	2e-24	629 - 688	100	60 / 60	plus	ABC17417
JLOC1	JLOC1_6783.1	739	8e-25	634 - 693	100	60 / 60	plus
Harvest21	ABC17417	881	3e-25	799 - 858	100	60 / 60	plus	ABC17417
Harvest35	U35_8193	881	3e-25	799 - 858	100	60 / 60	plus

Contig Sequence (881 bp)

>U35_8193 881 Hv_44K_v2
GGCACAGACGGATCTCCAACCAACACCCACGTCAACTTTTTGAGGAATCGGAGATTTGTT
AGAGCGCTTTGTTCATAGGGATTCGTAGTTCGTACGCCCATCTATCGATTAGCCATGGCC
TTGCGATTCTTCCTCAAGAAAACCTACCACCCGTTGGCCAGATCAGGAGACCTCCTACAC
GCGTCTGCTCGGGCGGCGGCCGCCGCCGCTCCGGCTGCCGGACGTATCTCGACAACAAGG
TACTTAAGCATGTCACCATGCCATCATGCTGCTGCTGCGAAAATAAGCAACCCCAAAACT
GGCATGCCCTCAATAAATATCAATTACATGAAGTCGGTATTAGTGGACTCTTCTAGAAGG
TCAATGCAAACTTCTTCGACCAGGGCAACCATGATAAATGTCGAGCCATCTTCGGCATCC
CAACTCGCAGAGTCAGGAGCTAGCTATCGAAGATTTTTGAAGAATGTTAGGCTCTTCGCC
TGTGGTTTGAGCTTGGTGTGGGCCATTACGCTATACTCTGTATGGTCAAAGCAGAATAGA
TGTCCTTGCAATTGTCAATGTCGCCATTCAAAATCCTCTAATATGAAAAGAGGGGGTCAG
GTAGTTTGAGTCGGCGGCCGCCTTTTTGCCTGTGGTCGAGTTGAATCGTTCTCCCTATTA
GGTGGGTGAACGAAAATTTATGCATTGTCTTTTTTTACCGAGTCATCCACGTATATGTGA
TCATGGAAACAAGAAAATAAAAAGGGTGTGGACGTCGGAAATGATCTAAAACGGCAGCTG
CTGGAGGTTTAATGAAACCCGCTTGGGACATCGTATAATTTTTCCAACTGTAATGATATA
TGCTTGTAATTTACATGCTCCCATAAAAAAAAAAAAAAAAA

Homology of Contig U35_8193 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None