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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5683_PI390587928Hv_44K_v2CCAATTTTGATGTGACGGAGCATTACTGGTTTCCTATGCTTGCTGGCTTGTCTGATCTGA708GeneList: skyblue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.8490.8191.8821.4331.0400.880
Raw 43.85057.978132.024141.39839.88237.780



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_3938.116012e-24704 - 76310060 / 60plus ABC05035
JLOC1JLOC1_2378.116018e-25702 - 76110060 / 60plus
Harvest21ABC183527683e-25709 - 76810060 / 60plus
Harvest35U35_81997683e-25709 - 76810060 / 60plus



Contig Sequence (768 bp)

>U35_8199 768 Hv_44K_v2
GGTAAAACTGCCAGTGATTCCTTGTTGAATTCTTCGATGGCCTTTGTAGTGTTTCTGCTG
AAGAACTTAAACAGACGCCTCCTCGTGTCTTCAGCTTGCAAAAGCTTGTTGAAATAAGCT
ACTACAATATGGCACGGATACGTTTGGTGTGGGCCAGAATATGGTCGGTGCTGGCTCAGC
ATTTTATTGCTGCTGGGAGCCACCATGATGAGAAAGTTGCTATGTATGCCATTGACTCAC
TGAGGCAGCTTGGCATGAAGTACCTGGAACGTGCAGAGCTGAACAAATTCACATTTCAGA
ATGACATACTGAAGCCTTTTGTTATTTTAATGAGGAATAGTCGCAGCGAAAAGATCCGTG
GTCTAATTGTCGACTGCATTGTTCAGCTGATCAAGTCAAAAGTTGGTAGCATAAAGTCAG
GTTGGCGTTGCGTGTTCATGATATTCACTGCAGCAGCTGATGATGAGAATGAATATATTG
TTGAAAGTGCTTTTGAAAACGTTGAACAAGTTATCTTGGAACATTTTGATCAAGTTGTTG
GTGATTGCTTCATGGATTGTGTTAACTGTCTTATTGGTTTCGCGAATAACAAATGCACTC
CTCGGATTAGTTTGAAGGCTATTGCTCTCCTACGTATATGTGAAGATCGTTTGGCAGAGG
GGTTTATTCCTGGTGGTTCTGTTAAGCCTGTTGATGTTCTCCCAGAGGCCAATTTTGATG
TGACGGAGCATTACTGGTTTCCTATGCTTGCTGGCTTGTCTGATCTGA



Homology of Contig U35_8199 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os07g37750.116814e-155protein|ATMIN7, putative, expressed
Brachypodium v1_2Bradi1g24597.116835e-159
Arabidopsis v10AT3G43300.117583e-137| Symbols: ATMIN7, BEN1 | HOPM interactor 7 | chr3:15234235-15245034 REVERSE LENGTH=1758