barSeed - Barley Seed Development Database

Probe CUST_5682_PI390587928

Source Contig U35_13200

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5682_PI390587928	Hv_44K_v2	CTATATTTGGGTACTCCGAGTATCAAGTGTTTATGTAGTTTACAAGCTTTACGAAGGAAA	1135	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.466	1.290	1.207	0.767	0.479	0.358
Raw	93.498	114.476	105.155	93.669	23.030	18.830

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376299	3935	7e-23	2814 - 2873	98	59 / 60	plus	ABC10071 ABC10072 ABC39605
Harvest21	ABC22947	1235	3e-25	1136 - 1195	100	60 / 60	plus
Harvest35	U35_13200	1235	3e-25	1136 - 1195	100	60 / 60	plus

Contig Sequence (1235 bp)

>U35_13200 1235 Hv_44K_v2
GGCCCCATTGAATAAACAACTACTAGCAGATGCACCTACTTACTATTAGGAGTATTTCCA
CGTAATGGGTGAAAAAAAAAAACAATAGCAACGCCAAAAAAAGTGCACAAAATTACTTAC
AGTCAGTATGGTCGTGTTCTGCATACTCAACATCTTGGAGTGTAAAAACTGTTTCGGTAG
GTTCGCTTACTGCTGGAATGACATCGGAAAAAACAAATCCAACAGCTGCATCGACATCAG
AGGAATACTGACTGGCTACAGCCTTCAATATTCGAAGATCAACCTGTAACACAAATACAA
AGGAAAAAAATAACCTCAAATATGCCATGTTTTCTTTATCTCGATGTACAGTTGCAATGC
GTCAGAATTGGTTGCATAAATACAGTTACTTGCTTCTACTGGAACGTTCGCTTGTACTAG
AATTTTTCTAAAGCTAATGGAATACCCTTGTACTCCGTCTAAAGCTTTCATGATGACTAC
TTTTCGAAGATACATGTGACAAAGAGGAGGAGCCCAGGGAGCTGAATGTGAAAGGATAAA
GTAGTCAGGAAGGAGAAATCATATGTTGGCTTAACTAATGCTTCCTAATCAGAACATGAA
CCTTATGATGACCCATAGTTGGATGTATGTGAGAGGATGAATATTCAGAAATCCTTGATG
ACTGGGATTCTAGGAAGACGATCACATACTCGACCAGCCCACCTGTCACCGCGAGACAAG
CTAAAAGTGAAGCAACTACAGGATCAACAAATTGTCAAGCACACATGCTACAACCATCAA
TTTCTGTGATATTAACCATCTAACTCTGCAATGTTCACACACTGGTTTCCGTCATCTATA
CGATTATGTTTCCATTACAGTTGTTTGTTTCTCCAATGACTATGTATACTCTTACGCACG
ATAAAAAATATATTCAGGCTATGCCAGTGCATCCAAAAGAGTTGGTACCCACGAGTTCGT
TTTCCTATTATGTGCATTGCTGGGAGCCTGGAACCTTCAAAAATTTATATTACATACGAA
ATCATTTCCATCAGCGCCTGCCTACAACATAAAAATTGTTAGCCTTCCCAAAGACGAATT
TCTGCACAACATTCTGGGAATTCACGTATTTGTGTCCGTACATTTTTCACCTTGACTATA
TTTGGGTACTCCGAGTATCAAGTGTTTATGTAGTTTACAAGCTTTACGAAGGAAAAAAAA
GAGGCGAGAGCCAAAATTGGATGCAACAATGGCTT

Homology of Contig U35_13200 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None