barSeed - Barley Seed Development Database

Probe CUST_5664_PI390587928

Source Contig U35_1642

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5664_PI390587928	Hv_44K_v2	AAGCTAATGGTCAATGTACTTTGTATTTCTTGCAGACAGATAGCTGCTTCACCCAAAAAA	1621	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.944	1.983	1.227	0.860	0.265	0.409
Raw	65.755	106.446	55.354	61.923	5.949	11.080

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5355.2	4323	9e-22	4075 - 4129	100	55 / 55	plus	ABC04370
MLOC	MLOC_5355.1	2273	9e-22	2072 - 2126	100	55 / 55	plus	ABC04370
JLOC1	JLOC1_3442.1	2284	5e-22	2078 - 2132	100	55 / 55	plus
Harvest21	ABC04370	1690	3e-25	1622 - 1681	100	60 / 60	plus	ABC04370
Harvest35	U35_1642	1692	3e-25	1622 - 1681	100	60 / 60	plus

Contig Sequence (1692 bp)

>U35_1642 1692 Hv_44K_v2
GGTTTCTCCTACTCCCTAGCACCTCTATCCGCTCCCCGCGAGCGATGGTGGGCGACCTGT
CCCTCCTCGCCTCCGCCACCGCCTCCCCCGTCCTCCTAGCGCCATCCAAGGAGCTCCATG
GCGTCCTGCCGTTCCAGGGGAAGAGGTCCCAGCAGCAGCAGCAGGACGCTGGGAGGAGCG
CCGCCGTGCAGCTCTCCCCGCAGCAGCACCTCCTCGAGGGCGCCTACCAGGCGCAGCAGC
CCCTGCAGATGATGGTCCCCGGGATCGGCCAGGCCGCCGCCGCCGCCTACCAGGCCTTCG
ACAGCGCCGCGCTCATCGACGCGCAAGATTCCCACCCTGATTCGGTTCGACTTAGCCTTG
GGATTGCTGAGCAGTGTGCAAGGCAAGAGAAAATCCTAAAGTTTCTAATGTCAGGGTCCG
ATGTCAAAGAACTTGACGCCTCTTTGCTTACTGAACTTACGGGACATCCGATGCTATCAG
CTAATATGGGTAGCCAACCATATACTCCTGATGACAAGTTATCTGTATATGAGTTTGGAT
TGGAGGAGCCTCTGCAGTATCTAGCAGAAAATCAACTTATCCTCCCTGATGACAAGTTAT
CTATCTACGAGTTTGGATCGGAGGAGCCCCTGCAGTATCTATCAGAAAACCAACTTATCA
TCCCTGATCCACTTTTGGAATTTGCTCAGTCCCAAGGTGCCCTTGCTATAGATGAAAATG
GCCGGGTCATCTTCACTGGCAGTGGAGAGGAGATGAGAGACTTACTTTCAGTTTTCTTAG
AGTTCAATGTACCTAAACGAGAACCAAGTGGTTGCAAGGCTGCATATTTAGTTCCATACT
TCGACAGGAAAAGGGGCCGAAATAGTAGTCAATCCAATTCAAAATCAGCAAGCACCGCAG
TTGATGCTCCAAAAAGCAAGGCAAACGTGAAGGCAAAATCTCCATCAAAGAAGAAACAGA
AAGGAAAAACCATCAATGAGCGTGACATGTATCAGAATAACTATTTCCATGCCAGCGAAG
CTTTTTTTTCAATCCTTCTGGACAAGGACAACAGCTCGACAATTCTCTCGCTGAAGAAAG
CAGGTCCCGAGATCACTGAACTGTTGACACAATGCTCTATTGGTATTGCTGGAACTGGTC
TGGCTGTTCTTCTGTCGGTCGTGTGCAAGATCGCCATTGGCGGGAGGACTCCTTTTGCCG
CTACTCGGCTGCTGCACACAGGCGTTGGGTTTGGGCTCTTCTGGCTCTCCCACGCGGTAA
ATGGACTGCGGAACACAATCACCACCGTATTCAGAGGCCCGGTCGACGCAAAGTTGGAGG
ATGAGGTTGCTGTGAAGATACAAAGAAGCATGAACGATATTCTCTTCAGGGCCGTAACTC
TCCTGGCAATCACTGCTTTGAGGTTTGCATAAGCTGTTCCTACACTGCTGTAACTTGACG
CACCTCGATGTATGATTACCCTTTTGGTTCAGGAGTGCGGTTTCTGTAGGACTAAAGTGC
CAAATACCTTCATGATTCATGATGGCCTCATAGAAAATGTGAGACGTTGTAAATTGTACA
GAATTTTGCTGGCAGCTCGGTGTATATGGAAGATAGATTTTGCCTGTTCTGAACGTTAAT
TAAGCTAATGGTCAATGTACTTTGTATTTCTTGCAGACAGATAGCTGCTTCACCCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_1642 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g05140.2	454	5e-165	protein\|expressed protein
Brachypodium v1_2	Bradi2g36480.1	427	0.0
Arabidopsis v10	None