barSeed - Barley Seed Development Database

Probe CUST_5663_PI390587928

Source Contig U35_1643

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5663_PI390587928	Hv_44K_v2	TGGTGCTCTTTTGGTTTACGACATCACCAGGAGGGAAACGTTTAATCATCTTGCAAGCTG	504	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57706.1	1204	2e-24	616 - 675	100	60 / 60	plus	ABC04704 ABC04706
JLOC1	JLOC1_37436.1	1348	8e-25	565 - 624	100	60 / 60	plus
Harvest21	ABC04704	1010	3e-25	313 - 372	100	60 / 60	plus	ABC04704
Harvest21	ABC04703	565	3e-25	505 - 564	100	60 / 60	plus
Harvest35	U35_1644	1043	3e-25	313 - 372	100	60 / 60	plus
Harvest35	U35_1643	566	3e-25	505 - 564	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_1643 566 Hv_44K_v2
AACGTCTCCTTCCTTCCGAAGTAAAAGCAGGCAGAGGAAGGGTTCCCCCCTCCCTCTCTC
TCCCTCCCTCGTCGCTGCTCCTCTCCAAATCCCCTGAACCCCGCGCGCACGCTCCCCGGA
GGAGACATGTCGTACGCCTACCTCTTCAAGTACATCATCATCGGCGACACAGGTGCCCTC
CCCTCCCCTTCCCTTCCCCGCCTCCGGCGAGATTCGGCGGATCCGTGCCGCTCCCCTCGC
CGGGGAGATCTATCCATCCATCCCCGCCTCTGCTGAATCCGGTTCGAGCTGACGGTCGGG
TGGTCGTGCAGGTGTCGGCAAGTCGTGCCTGCTGCTGCAGTTCACCGACAAACGCTTCCA
GCCCGTCCATGACCTCACCATCGGCGTCGAGTTCGGCGCCCGGATGATCACCGTCGACAA
CAAGCCCATCAAGCTCCAGATTTGGGACACGGCAGGCCAAGAATCATTCAGATCGATAAC
TAGATCATACTACAGGGGAGCCGCTGGTGCTCTTTTGGTTTACGACATCACCAGGAGGGA
AACGTTTAATCATCTTGCAAGCTGGC

Homology of Contig U35_1643 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37420.1	211	7e-52	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi5g13000.1	211	3e-52
Arabidopsis v10	AT4G17170.1	211	3e-52	\| Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B \| RAB GTPase homolog B1C \| chr4:9644908-9646220 REVERSE LENGTH=211