barSeed - Barley Seed Development Database

Probe CUST_5661_PI390587928

Source Contig U35_1645

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5661_PI390587928	Hv_44K_v2	GTGGATATTCATTTGTTCGATGTAATAATGCTTTGTAGACTACCGACATGGCTGTGCAAA	948	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54966.1	1939	2e-23	791 - 848	100	58 / 58	minus	ABC04704 ABC04705 ABC04706
JLOC1	JLOC1_35423.1	2049	1e-23	1153 - 1210	100	58 / 58	plus
Harvest21	ABC04706	1042	4e-24	949 - 1006	100	58 / 58	plus	ABC04706
Harvest21	ABC04705	594	4e-24	10 - 67	100	58 / 58	minus	ABC04705
Harvest35	U35_1645	1067	3e-25	949 - 1008	100	60 / 60	plus

Contig Sequence (1067 bp)

>U35_1645 1067 Hv_44K_v2
GCCTCCTTCTCTTCCACGGTGCACAAGCGCCCGCAATTCCCCTTCCCCTTCCCCTTCCCC
TTCCCTCTTAAACCAATCAGACGCTAGAATCTCCGATCCATTCGCCGCCGCCGGGATCGA
CCATGTCGTACGCCTACCTCTTCAAGTACATCATCATCGGCGACACAGGCGTAGGCAAGT
CATGCCTGCTGCTGCAGTTCACCGACAAGAGGTTTCAGCCCGTGCACGACCTCACCATCG
GTGTCGAGTTCGGCGCCCGCATGATCACCATCGACAACAAGCCCATCAAGCTCCAGATTT
GGGACACGGCTGGCCAAGAATCATTCAGATCTATAACAAGATCATACTACAGAGGTGCTG
CTGGTGCTCTTTTGGTTTATGATATCACCAGGAGGGAAACTTTTAACCATCTTGCGAGCT
GGCTAGAAGATGCAAGACAGCACGCAAATGCCAATATGACAGTGATGCTAATTGGAAACA
AATGTGATCTGTCTCATAGACGGGCTGTCAGCTATGAGGAGGGTGAACAGTTCGCCAAGG
AGCATGGTCTAGTCTTTATGGAGGCATCTGCAAAAACAGCACAAAATGTTGAGGAGGCAT
TCATTAAGACGGCTGGAACAATATACAAGAAAATCCAAGATGGTGTTTTTGATGTATCTA
ATGAGTCCTACGGTATCAAAGTTGGGTATGCTGTCCCCAATGCATCTGGAGGTGGTGCTG
GCTCGTCCTCTCAAGCAGGCGGCTGCTGCAGTTAAGCAAGTTGACGACCAAGTCCTATCA
TGTGAGACAGAGAACAGCTGCCCAGGTTGTTGTCGTTCCTTCAGCCGTTGACGGTGTAAT
CAGTGAGCAAATGTTCATCAATGGTACTTGTCTACACTTGTGCAATCTTTCCGTAAAGCA
AACATCTATAGTTTCTGTCCATCTGTGTCTGTAACTAAATGAAATGGTGTGGATATTCAT
TTGTTCGATGTAATAATGCTTTGTAGACTACCGACATGGCTGTGCAAAAAAAAAAAAAAA
CCGTGTCACAATATTTGGGCAATAGCAGCAAAGATTATGCTCAATTT

Homology of Contig U35_1645 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g37420.1	211	2e-135	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi3g47240.1	211	1e-134
Arabidopsis v10	AT4G17170.1	211	1e-129	\| Symbols: AT-RAB2, ATRABB1C, ATRAB2A, RAB2A, RABB1C, ATRAB-B1B, RAB-B1B \| RAB GTPase homolog B1C \| chr4:9644908-9646220 REVERSE LENGTH=211