barSeed - Barley Seed Development Database

Probe CUST_5659_PI390587928

Source Contig U35_1647

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5659_PI390587928	Hv_44K_v2	GAGGATTTTAATTAGCAATAAATAAAAACTGTACCGTACCGTGTGCACGCGTGTTTGCTT	1890	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.063	4.207	1.404	0.693	0.479	0.724
Raw	100.839	98.753	29.143	22.690	4.091	8.413

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22287.1	1777	2e-24	335 - 394	100	60 / 60	minus	ABC26235
JLOC1	JLOC1_15447.1	1627	8e-25	185 - 244	100	60 / 60	minus
Harvest21	ABC26235	366	1e-23	290 - 349	98	59 / 60	plus	ABC26235
Harvest35	U35_1647	1971	3e-25	1891 - 1950	100	60 / 60	plus

Contig Sequence (1971 bp)

>U35_1647 1971 Hv_44K_v2
TGTTGGCCTAATGCAACGACAATGGCCACCGCTTCCTTCCGGCACGCGCCCGCCCGTGAC
CCATCAAGTCCAGTCCAGTCCTTGGAGTCATCCATCAATCTGATTCTGATTCTGGTTGAT
TGTCTCTCCTTCCAATTCCAACCCAAGCAAGCAAGGCACCTATACTCGCCTCTCAAACCC
AAGCAAAGCAAGCTTAAAACCCCCGCCCCGTGCACTCAGTCATCGCCATGCCGATGCCCA
TGGCGCCGCCGCTCCCGTGCTTGCTCCTCCTCCTGTTTGCCGTCCCTCTCCTCGCAACGT
CCGCCAGGATCCCGCTCTACCGCCACCTTCCCCCGCTCCCGCCCGCCGCCGCTCAGCACC
ACCCGCTCTCCCGCCTCGCGCGCGCCTCCCTCGCGCGCGCCTCCCGCCTCCGCGGTCACC
ACCAGGGCCAGGCCGCCTCATCCCCCGTGCGCGCCGCGCTGTACCCTCACTCCTACGGCG
GCTACGCCTTCTCCCTCTCCCTCGGCACGCCGCCGCAGCCGCTGCCGGTGCTGCTCGACA
CGGGCAGCCACCTCACCTGGGTGCCCTGCACCTCCAACTACCAGTGCCAGAACTGCTCCG
CCGCCGCCGGCTCCTTCCCCGTCTTCCATCCCAAGAGCTCCTCCTCCTCCCTCCTCGTCT
CCTGCAGCAGCCCCTCCTGCCTCTGGATCCACTCCAAGTCCCACCTTTCCGACTGCGCCC
GCGACTCCGCACCCTGCAGGCCCAGCACCGCCAACTGCTCCGCCACCGCCACCAATGTCT
GCCCGCCCTACCTCGTCGTCTACGGCTCCGGCTCCACCGCGGGGCTCCTCGTCTCCGACA
CGCTGCGCCTCTCCCCACGCGGCGCCGCCAGCCGCAACTTCGCCGTGGGCTGCAGCCTCG
CCTCCGTGCACCAGCCGCCGTCGGGGCTCGCGGGGTTCGGCCGCGGGGCGCCGTCCGTGC
CCGCGCAGCTCGGGGTCAACAAGTTCTCCTACTGCCTCCTCTCCCGCCGCTTCGACGACG
ACGCCGCCATCAGCGGCGAGCTAGTCCTCGGCGCCTCCTCCGCCGGCAAGGCGAAAGCGA
TGATGCAGTACGCGCCGCTGCTCAAGAACGCGGGCGCCAGGCCGCCCTACTCCGTGTACT
ACTACCTGTCGCTGACCGGCATCGCGGTGGGCGGGAAGAGCGTGGCGCTCCCGGCGCGGG
CCTTGGCGCCCGTGTCCGGTGGTGGCGGGGGCGGCGCCATCATCGACTCAGGCACGACCT
TCACCTACCTGGACCCGACGGTGTTCAAGCCGGTGGCGGCCGCGATGGTGGCCGCGGTGG
GGGGCAGGTACAACCGATCCAAGGACGTGGAGGGGGCGCTCGGGCTGCGCCCCTGCTTCG
CACTCCCGGCGGGCGCCAGGACAATGGACCTCCCGGAGCTGTCGCTCCATTTCAGCGGCG
GCGCCGAGATGCGGCTCCCGATCGAGAACTACTTCCTGGCGGCTGGCCCGGCGTCCGGCG
TGGCCCCCGAGGCGATCTGCCTGGCCGTGGTGTCGGACGTGTCGAGCGCGAGCGGCGGCG
CCGGGGTGTCCGGTGGGGGCGGGCCGGCCATCATCCTGGGCAGCTTCCAGCAGCAGAACT
ACCAGGTGGAGTACGACCTCGAGAAGAACCGGCTCGGGTTCCGGCAGCAGCCATGCTCCT
CGTCGTCCTCGTAAAGATGGTTGGTGGCAATGGCATGCAGATGCATGCTCGCGTACCTAC
GTACTACTACTACTGTATCATCCGACTTGATTAATCACGCCACGCCACGCCACGCCATGT
AGTAGTGGAAAAGTTAGTGACAGATTAAGCTTGCCTGCTCGTGCAGCTTTCGGATCCAGA
TTCCAGAGTACTACTAGTAGTACTCCTAGTGAGGATTTTAATTAGCAATAAATAAAAACT
GTACCGTACCGTGTGCACGCGTGTTTGCTTAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1647 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58840.1	491	1e-168	protein\|Eukaryotic aspartyl protease domain containing protein, expressed
Brachypodium v1_2	Bradi5g26620.1	494	9e-173
Arabidopsis v10	AT3G52500.1	469	2e-76	Eukaryotic aspartyl protease family protein \| chr3:19465644-19467053 REVERSE LENGTH=469