barSeed - Barley Seed Development Database

Probe CUST_5658_PI390587928

Source Contig U35_1648

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5658_PI390587928	Hv_44K_v2	ATGAAGTCTTTGTGTATGCCCCTACTAATATAATGTCATGGTTGGTTGGGAATGAAAAAA	1869	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.150	1.069	1.098	1.011	0.448	0.479
Raw	1722.630	2493.353	2236.837	3216.123	514.249	586.787

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13835.2	1817	2e-21	1715 - 1768	100	54 / 54	plus
JLOC1	JLOC1_13835.1	1967	2e-21	1865 - 1918	100	54 / 54	plus
Harvest21	ABC04160	1940	3e-25	1870 - 1929	100	60 / 60	plus	ABC04160
Harvest35	U35_1648	1940	3e-25	1870 - 1929	100	60 / 60	plus

Contig Sequence (1940 bp)

>U35_1648 1940 Hv_44K_v2
CAGCTCTCCCCCAATCGTCCCCGCCGCTGGTAGCTAACCATCTCGAGCGTTCTCGCCGTC
GATTGTTGTTGCTTTTCGTGGGGAGGAGGCGATGGCGAGCGGCGGCGGGGCGGTGAGGGA
GGTGGGGTCGAGGGCGGAGCTGGACCCGGCGGTAGGCGGCGCGCGGGCCGCCGCGGTGCA
CTTCTGGGCGGCCTGGTGCGAGGCCTCCAAGCAGATGGACGAGGTCTTCGCCCACCTCGC
CGTCGACTTCCCCCACGCGCTCTTCCTCAGGGTTGAAGCTGAAGAACAACCGGAAATTTC
AGAGGCATATGGAGTTACAGCAGTGCCATACTTTGTTTTCTGCAAGGAAGGCAAACCTGT
TGATACCTTGGAGGGCGCAAACCCAGCCAGCCTGGCCAATAAGGTTGCAAAGTTAGCTGG
GCCTGCCAATGTTGCTCAGTCTGCTGTACCTGCTAGCTTGGGGGTGGCTGCCGGGCCTGC
TGTACTCGAAAAAGTCCAAGAAATGGCACGGCAAAATGGATCTTCTGCTGCTGAAAGTAC
ACTGAAGAAGCGTTTGGAGCAGCTTGTCAATTCCCATCCTGTCATCTTATTTATGAAGGG
AAATCCAGGAGAACCAAGGTGTGGGTTCAGCCGAAGGGTGGTTGACATTTTGAAGCAGGA
AGGTGTTGAATTTGGGAGCTTTGACATCCTTTCAGATAATGAAGTACGTGAAGGGCTGAA
GAAGTTCTCTAACTGGCCAACTTTTCCTCAGTTGTACTGCAAAGGTGAGCTGCTTGGTGG
ATGTGATATTGTTATTGCCATGCATGAAAGTGGTGAACTGAAGGATATGTTAAAGGAGCA
TAACATTCCTCTCGGGCAACAAGGAACCAAAATTGAGGAGCCGGTGATATCTGAATCTGC
AAATGAACAGAGTCCTGAGGCAATTGGGCTTACTGAAGCTCAGAAAGCTCGTTTGGAGAG
TCTCACTAACTCTAACCCAGTGATGATATTTATCAAAGGTTCACCCGAGGAGCCCAAGTG
CGGATTCAGTGGAAAGGTCGTTCACATTCTTAAGCAAGAGAAGATTCCTTTCTCAAGTTT
TGACATTCTTACAGATGATGAGGTTAGGCAGGGCCTAAAGGTTCTATCAAACTGGCCTAG
TTACCCTCAGGTGTACATCAAGGGTGAATTGGTTGGTGGTTCGGACATAGTGATGGAGAT
GCATAAGAGTGGGGAACTGAAGAAGGTTCTGACTGAGAAAGGGATTATTCCGGAAGAGAG
CCTAGATGGCCGACTCGAGGCTCTAATTTCCTCATCCCCAGTGATGCTGTTCATGAAGGG
CAACCCAGATAATCCACGTTGTGGCTTTAGTTCGAAAGTGGTGAATGCCTTGAAAGGAGC
AGGGATAAGCTTTGGGTCCTTTGACATTCTATCTGATGAGGAAGTTAGACAAGGTCTGAA
GACATACTCGAACTGGCCCACCTTCCCCCAACTCTACTACAAATCAGAACTGATGGGGGG
CTGTGACATTGTTCTCGAGCTGGAAAAGAGTGGAGAGCTGAAGGCCACTCTTTCGGAGTA
GCATAGCATATGTCGGTGCTATATGGTGTCTTATGGTGTTTCGAGCATCTGTCCTATATC
GAATTGCTCTATTGATGGCATTGTTATGCCAATGTATTTCATAGATCCATGTTTTAAACT
TGGATATCCTAGTGCTACGTTTGCTTGAACTGTGACAGCTGCAGGAGAAATAACTTATAA
GACCTCTTAAGTGACCTGTTAGTCTTGTATTACCCCTTCATTTTTGCTGCCTTGGTTCAG
GCTGGATGATGTAGAACATAAGTATTAGCCATCATTTCACAGTTCAAAGACGTATGATTC
GTAACGTTTATGAAGTCTTTGTGTATGCCCCTACTAATATAATGTCATGGTTGGTTGGGA
ATGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1648 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g35720.1	492	protein\|OsGrx_S17 - glutaredoxin subgroup II, expressed
Brachypodium v1_2	Bradi3g30080.1	492
Arabidopsis v10	AT4G04950.1	488	thioredoxin family protein \| chr4:2517882-2519924 REVERSE LENGTH=488