barSeed - Barley Seed Development Database

Probe CUST_5657_PI390587928

Source Contig U35_1649

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5657_PI390587928	Hv_44K_v2	ACCAAACATGGGCAGAGGCACCAAGCTTCCATAATATTCTTATTTTCAATACAGGACATT	552	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376745	1483	2e-24	697 - 756	100	60 / 60	plus	ABC04712
MLOC	MLOC_68421.1	1027	2e-24	224 - 283	100	60 / 60	minus	ABC04712
JLOC1	JLOC1_45268.1	1159	8e-25	750 - 809	100	60 / 60	plus
Harvest21	ABC04712	1362	3e-25	553 - 612	100	60 / 60	plus	ABC04712
Harvest35	U35_1649	880	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (880 bp)

>U35_1649 880 Hv_44K_v2
GCCTAATCCTGATCTTCCCATCTCGCTCCATCTCCGCGCTCCGCGACGCAGCTGTCAGGT
CGCAGCAGACCTGCGACTACGCCGCCGGCGGATGGGTGCCCGACTCCTCCGCCGAGTCCC
ACCTCCGGTACGACCACACGTGTAAGGAGATCTTCAAGGGGTGGAACTGCATCGCCAACG
GCAAGCACAACGGCCACGCCCTCCTCCGCTGGCGATGGAAGCCCGCGGGGTGCGAGCTAC
TCCCCAGGCTCGACCCGCTCCGGTTCTTAGAGCATCACAGAAACACCAATATTGGATTTG
TGGGTGATTCTTTGAATCGAAACATGTTTGTCTCATTGGTCTGCATGCTCAGGGGAGTGA
GCGGAGAGGTTCGCAAATGGCGTCCAGCAGGGGCAGACCGAGGTTTCACATTCCTACACT
ACAACCTCACCCTCGCATACCATAGAACTAATCTTTTGGTACGCTATGGCAGCTGGTCAG
CCAGTCCAAACGGAGGTTCCCTAGAATCTCTTGGATACAAGCAAGGCCACAGGATTGATG
TTGATATTGCCGACCAAACATGGGCAGAGGCACCAAGCTTCCATAATATTCTTATTTTCA
ATACAGGACATTGGTCACAGGGACTTCTCCTGTGCTGATGGGGAGCGGGTCACATGTCTC
TGTTCGAGGTGTCGGTACGGCCGATCTGAAGTTTACTTTGGGGAAGATCGTGCGCGTGAA
GAACGTTCATCATGTGCCCTCCATCAATAAAAATCTCGTCAACGGTTCCCGTATGTGTCG
AGATGGTTTTAAGTTGGTTTTCGAGTCCAATAAAGTTGTAATTTCTAAGTATGGACAATT
TGTTGGAAAAGGCTATGAGTGCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_1649 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g31550.1	414	7e-112	protein\|powdery mildew resistant protein 5, putative, expressed
Brachypodium v1_2	Bradi1g26890.1	404	4e-126
Arabidopsis v10	AT2G14530.1	412	4e-90	\| Symbols: TBL13 \| TRICHOME BIREFRINGENCE-LIKE 13 \| chr2:6187484-6190137 FORWARD LENGTH=412