barSeed - Barley Seed Development Database

Probe CUST_5656_PI390587928

Source Contig U35_1650

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5656_PI390587928	Hv_44K_v2	GATTTGTTTGTTGGACGATCAAACAGAGTAAAGTTTTCTCGCACAGACTTATCTTTCAAA	670	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.941	2.558	1.315	0.750	0.278	0.311
Raw	1057.647	2140.012	973.288	874.044	115.774	137.521

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60906.1	700	7e-23	421 - 477	100	57 / 57	plus	ABC04712
JLOC1	JLOC1_39753.1	782	4e-23	634 - 690	100	57 / 57	plus
Harvest21	ABC04712	1362	5e-23	1290 - 1348	98	59 / 60	plus	ABC04712
Harvest35	U35_1650	1176	3e-25	671 - 730	100	60 / 60	plus

Contig Sequence (1176 bp)

>U35_1650 1176 Hv_44K_v2
GTCCTCTTCAAAGTTTGATCCAACACAGTCACCGATGCTCTTCTTTGAGGAAGGGAAGCC
GATTATACCTCCTTTACTGCCACCTGAAGGACTGGATTTGACTCTTAAACACATGATAAC
ATTTGTGGACAAAGCAATGAGACCCAATGGATTGAAATTCTTCAGCACTCAATCTCCTAG
ACATTTTGAAGGTGGTGACTGGAATGAAGGTGGATCTTGTCAACGTGACCAACCCTTGTC
CTCTAAAGAGGTCAAAGAATTTTTCTCCTTGGACAACAACGGCACGAACGTAGAAGTACG
CTTGGTAAACCAGCACTTGATGAAGGCTCTGGAGCAGTCTACCTTCAGAGTTTTGAACGT
CACTCACATGAGCGAATTCAGAGCTGACGCTCATCCGGCGACAACAGGAGGAAAGAAGCA
CGACGACTGCATGCATTGGTGTTTACCAGGACCAACCGATGTATGGAACGATTTGCTAGC
CTCAAGTCTTTCGGCAATTTAGAGATAGCCTTGTGAAAAAATTTCCCCAACTTTTTTTCT
TGGGGTATGAATACGATGGAGCATTATTCGTTGGCACAGAAGAGATTTCCTCCGAATACC
AAACTGTAGATTTAACCAAATATTAGAGTTTTATCGATTTGTACTCTTGAATCCTAGAAT
AGCTTAACTGGATTTGTTTGTTGGACGATCAAACAGAGTAAAGTTTTCTCGCACAGACTT
ATCTTTCAAAAAAAAAAAAAAAAAACTTCCCACTTCTCCGGCACTTGCCCCGATCCCGCG
GACGCCGTCCGCTGCCTGCATCGTCTCAGGCGAGCTCCCCTGCCCCGCCAAGCAAGGATG
ACTACTTCAAGGCGTCTTGCTGACAGGAAGAGTGCGAAGTTCAGAAGAACATCACAAAGA
GGGGCTCAGTGCCTGAAACTACTGTGAAGAAGGGGAATGACTATCCTGTCGGACCTATCG
TGCTTGGATTCTTCATCTTTGTGGTCATAGGATCATCCTTGTTTCAGATTATCAGGACGG
CTACTAGCGGTGGGATGGCTTAATATCGAGCTAAAACAAGACTATTGTTATCAGAGATTT
ATTATCCATGTGTTTGGGAGGCAATGTCATATCTGTACTCTGTAGCAAACTTTGACCCCG
ATGATGTTATGTGAGATTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g31550.1	414	2e-83	protein\|powdery mildew resistant protein 5, putative, expressed
Brachypodium v1_2	Bradi1g26890.1	404	5e-89
Arabidopsis v10	AT2G14530.1	412	3e-66	\| Symbols: TBL13 \| TRICHOME BIREFRINGENCE-LIKE 13 \| chr2:6187484-6190137 FORWARD LENGTH=412