barSeed - Barley Seed Development Database

Probe CUST_5651_PI390587928

Source Contig U35_1655

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5651_PI390587928	Hv_44K_v2	CCTTTTTCCTAGTGTGATTGGTGTAAGTAACCTTATAAATAAATGTCCCCCTTTTGCTAA	572	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67805.1	1170	6e-24	41 - 99	100	59 / 59	minus	ABC04380
MLOC	AK376786	686	9e-22	629 - 686	98	57 / 58	plus	ABC04380
JLOC1	JLOC1_44801.1	784	3e-24	667 - 725	100	59 / 59	plus
Harvest21	ABC04381	699	3e-25	567 - 626	100	60 / 60	plus
Harvest21	ABC04380	551	1e-24	74 - 132	100	59 / 59	minus	ABC04380
Harvest21	ABC04382	694	1e-23	16 - 75	98	59 / 60	minus
Harvest35	U35_1655	707	3e-25	573 - 632	100	60 / 60	plus
Harvest35	U35_1656	694	1e-23	620 - 679	98	59 / 60	plus

Contig Sequence (707 bp)

>U35_1655 707 Hv_44K_v2
GTGGTCTCTTATGCTCTTCACCACCTCCCGAGTCTGCCATGGCATCCATGATGTGCTCCT
ACTCCTACTCCTACTCCATGCCCGCCGCCGCCAGGGCTCCGGTCCTCCGCAGCAACGCCA
ACGCCGCCTCGCTCGGGTTCGCCACCTCGCAGCTCGCGGGCCTCAGCCTCGGCCTCACCT
CCACCGCGGTCTCCATCCCCACCAACACCAAGAACGCCATCGTCGCGCGTCGGATCTGCC
CCTTTCTGGAGAAGAAGACGAACCGGGCCAACAAGGTGTCCTTCTCCAACCACAAGACCA
AGAAGCAGCAATTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGCCGGAAAGCGCT
ACGTCAAGCTCAGGCTCTCCACCAAGGCCCTCAAGACAATCGAGAAGCACGGCCTCGACG
CCGTCGCCAAGAAGGCCGGCATCGACCTCAACAAGAAATGAGTGATGATGACCCATAGCA
TATCTTCTTGATTTCCTCACCTCATCCATTTCAATGGAATGGAATGGAATGTAGTATGCG
AAATGGATTTATCTTCAGTTTTCCTTTTCTCCCCTTTTTCCTAGTGTGATTGGTGTAAGT
AACCTTATAAATAAATGTCCCCCTTTTGCTAAAAAAAAAAAAAAAAAGTTAATGGTAAGC
ATCATACATGCTGGAGCATCGTCATCGATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1655 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g01110.1	138	5e-61	protein\|ribosomal protein L28 protein, putative, expressed
Brachypodium v1_2	Bradi2g40040.1	137	5e-63
Arabidopsis v10	None