- Probe CUST_5650_PI390587928
- Source Contig U35_1656
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5650_PI390587928 | Hv_44K_v2 | CTTTTTCCTAGTGTGATTGGCGTAAGTAACCTTATAAATAAATGTCCCCCTTTTGCTAAA | 620 | GeneList: purple MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.405 | 0.499 | 0.946 | 1.842 | 1.339 | 1.294 |
| Raw | 593.764 | 1199.044 | 1948.310 | 5902.730 | 1496.963 | 1586.733 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK376786 | 686 | 7e-23 | 630 - 686 | 100 | 57 / 57 | plus | ABC04380 |
| MLOC | MLOC_67805.1 | 1170 | 9e-22 | 41 - 98 | 98 | 57 / 58 | minus | ABC04380 |
| JLOC1 | JLOC1_44801.1 | 784 | 5e-22 | 668 - 725 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC04382 | 694 | 3e-25 | 15 - 74 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC04381 | 699 | 1e-23 | 568 - 627 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC04380 | 551 | 2e-22 | 74 - 131 | 98 | 57 / 58 | minus | ABC04380 |
| Harvest35 | U35_1656 | 694 | 3e-25 | 621 - 680 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1655 | 707 | 1e-23 | 574 - 633 | 98 | 59 / 60 | plus |
Contig Sequence (694 bp)
>U35_1656 694 Hv_44K_v2 GCCTCGTGCCGGGCTGGCTCGCCTTGTTCATTTCTTCTTCTTATCCTGGTACGTGCTGCT GCTGCTGGTCTCTTATCCTCTTCAGCACCTCCCGAGTCTGCCATGGCGTCCATGCTGTGC TCCTACTCCATGCCCGCCGCCGCCAGGGCTCCGGTCCTCCGCAGCAACGCCAACGCCGCC TCGCTCGGGTTCGCCACCTCGCAGCTCGCGGGCCTCAGCCTCGGCCTCACCTCCACCGCG GTCTCCATCCCCACCAACACCAAGAACACCATCGTCGCGCGTCGGATCTGCCCCTTTCTG GAGAAGAAGACGAACCGGGCCAACAAGGTGTCCTTCTCCAACCACAAGACCAAGAAGCAG CAATTTGTGAACCTGCAGTACAAGAAGCTGTGGTGGGAGGCCGGAAAGCGCTACGTCAAG CTCAGGCTCTCCACCAAGGCCCTCAAGACAATCGAGAAGCACGGCCTCGACGCCGTCGCC AAGAAGGCCGGCATCGACCTCAACAAGAAATGAGTGATGATGACCCATAGCATATCTTCT TGATTTCCTCACATCATCCATTTCAATGGAATGGAATGTAGTATGCGAAATGGATTTATC TTCAGTTTTCCTTTTCTCCCCTTTTTCCTAGTGTGATTGGCGTAAGTAACCTTATAAATA AATGTCCCCCTTTTGCTAAAAAAAAAAAAAAAAA
Homology of Contig U35_1656 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g01110.1 | 138 | 4e-64 | protein|ribosomal protein L28 protein, putative, expressed |
| Brachypodium v1_2 | Bradi2g40040.1 | 137 | 2e-67 | |
| Arabidopsis v10 | None |