barSeed - Barley Seed Development Database

Probe CUST_5646_PI390587928

Source Contig U35_1660

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5646_PI390587928	Hv_44K_v2	AGGATTATCATTTGTACTGTGCCCACTGAGATTATACTCTTCAGCTCTTTCCTTCAAAAA	1727	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.686	1.599	1.204	0.860	0.365	0.375
Raw	684.787	1037.136	665.447	751.231	111.575	124.126

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK358390	1767	3e-22	1694 - 1749	100	56 / 56	plus	ABC04606
MLOC	MLOC_81336.1	1207	3e-22	115 - 170	100	56 / 56	minus	ABC04606
JLOC1	JLOC1_54112.1	1242	1e-22	105 - 160	100	56 / 56	minus
Harvest35	U35_1660	1787	3e-25	1728 - 1787	100	60 / 60	plus

Contig Sequence (1787 bp)

>U35_1660 1787 Hv_44K_v2
GCTCCTTCCCTCCCCCTCTCCACCCCCGTCGGCCCGGGCGGAACGAAAAGGCCACGCACG
CACGCACGGCTAGGGTTTATCCAGCCACCCGCCGCCGCCGCCGCCCCCGCCCCCGCCCGC
CGCTCCCCGCTCCCCGCGTAGGGCTTACCCGCCCTCTACATACCACGCGGGCGATGGACG
CGGCGGCGCTCGACGACGTGATCCGGCGGCTCCTGGAGGCGCGCGGCGGGCGGACGGTGC
GCCCCGTGCAGCTCTCCGACGCGGAGATCCGCCGCCTCTGCACCTCCGCCAAGGACGTCT
TCCTCAGCCAGCCCAACCTCCTCGAGCTCGAGGCCCCCATCAAAGTCTGCGGGGACATCC
ATGGCCAATATTCTGATCTTCTTCGATTATTCGAGTATGGTGGGTTCCCACCGGAGGCGA
ACTACTTGTTTCTGGGTGACTATGTTGATCGTGGCAAACAGAGTATTGAAACAATATGCC
TTCTCCTTGCTTACAAGATTAAGTACCCGGAGAACTTCTTTCTCCTTAGGGGAAACCATG
AATGTGCCTCTATCAACAGAATCTATGGATTCTTTGATGAATGCAAGAGGAGGTTTAATG
TTCGTCTCTGGAAGGTTTTTACTGACTGTTTCAACTGCCTCCCTGTGGCTGCACTTATTG
ATGACAAGATCTTGTGCATGCATGGGGGTTTATCGCCTGATTTAAAGAACATGGACCAGA
TACGTAACATTGCCCGTCCTGTGGATATTCCGGACCATGGTCTCCTCTGTGATCTGCTAT
GGTCAGACCCTGATAAAGATGTTGATGGCTGGGGTGAGAATGACAGGGGCGTGTCATACA
CTTTCGGAGCTGATAAGGTTGCAGAGTTCCTTGAGAAACATGATCTAGATTTGGTCTGCA
GGGCTCACCAGGTGGTGGAGGATGGATATGAATTCTTTGCAAAGCGTCAGCTCGTAACCA
TATTCTCTGCACCCAACTATTGTGGCGAGTTCGACAATGCTGGTGCCATGATGAGCATAG
ATGATTCACTAACATGCTCATTCCAGATCCTTAAACCTTCTGAAAAGAAAGGGAAAGCTG
GAACAGGCAACTCAAAACCTGGAACACCGCCTAGGAAGATAAAGATTAATATTATTTAGG
CAGACCCTTCGGGTACGAAATGAGTTATTGTGATGGAGCACACCCCCAAAAACTTGTTAT
GAAGGTGCGCCGAACAACGTGTTGAAAGTGGCAGCATGCATGCTGTTGTTTTTTCGTGGT
CCGAAGCAGATCTGTCCTGCCATTCTGGAAAGATCGGAGCAGGAAACATAACTGGGAATT
TTGTGTGTGGATTTCTTATTCCTTTTGTTGACTCTGCTATGCATGGCAAAGTGTTTAAGC
ACTGGAGGCGTCAGGAACCTCATCCTGCTGTGGAGATTGCCAATGCTGAATGTAGATTCT
GTTATGTTATGTACGATGTTTTATTATCTGTAAAGCTTGTCTCTGCAAATGACTGGCTAG
CTTTAGTGAATGTGTTTTGCTGATGCTGATGGTAGAGAATGACTGATAAGTATTTAATAC
CAAGTCTGCGGAGGGTTGCGGTAGGGTTATGTGTTTTGTCATTTCTATTTGAACATGTGT
TTAAGGTTTGTCATAGTTTTGTGATGTTGATGTTTATGGGTCACTGGGTATTTCGTTGGT
TGATAAAACCCGTTTGCCTAATGAACTCATCGCACCCAGCCAAGGTTAGGATTATCATTT
GTACTGTGCCCACTGAGATTATACTCTTCAGCTCTTTCCTTCAAAAA

Homology of Contig U35_1660 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g06880.1	323	protein\|Ser/Thr protein phosphatase family protein, putative, expressed
Brachypodium v1_2	Bradi1g48410.1	326
Arabidopsis v10	AT1G64040.1	322	\| Symbols: TOPP3 \| type one serine/threonine protein phosphatase 3 \| chr1:23758626-23760274 REVERSE LENGTH=322