barSeed - Barley Seed Development Database

Probe CUST_5643_PI390587928

Source Contig U35_1663

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5643_PI390587928	Hv_44K_v2	TGTCGGGGATGAACTCCATCCTCTTCTACTCGCCGGTGATCTTCCAGAGCCTGGGGTTCG	98	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK377021	1913	2e-24	957 - 1016	100	60 / 60	plus	ABC20294
MLOC	MLOC_76410.3	1834	2e-24	773 - 832	100	60 / 60	minus	ABC20294
MLOC	MLOC_76410.1	2654	2e-24	1022 - 1081	100	60 / 60	minus	ABC20294
JLOC1	JLOC1_50953.1	2508	8e-25	1424 - 1483	100	60 / 60	plus
Harvest21	ABC05535	465	3e-25	99 - 158	100	60 / 60	plus
Harvest35	U35_1663	465	3e-25	99 - 158	100	60 / 60	plus

Contig Sequence (465 bp)

>U35_1663 465 Hv_44K_v2
GGCGCGGGCGGTGCGCGGCACGTTCCGGAACCTGCTGGCCGTGCGTAACCGGCCGCAGCT
GATCCTGGGCGCGCTGGGCATCCCGGCGTTCCAGCAGCTGTCGGGGATGAACTCCATCCT
CTTCTACTCGCCGGTGATCTTCCAGAGCCTGGGGTTCGGGTCCTCGGCGGCGCTCTACTC
GTCCATCATCACCGGGTCGATGCTGGTGGTGGGCGCGCTGGTGTCCATGGTGGTGGTGGA
CCGGCTGGGGCGGCGGGTGCTGTTCATGGAGGCCGGGGTGCAGATGATCGTGTCGATGGT
GGTGGTGGCGACGATCCTGGCGCTCAAGTTCGGGCACGGGGAGGAGCTGTCCAAGGGCGT
GAGCACGGTGCTAGTGGTGGCCATCTGCATGTTCGTGGTGGCGTACGGGTGGTCGTGGGG
GCCGCTGGGGTGGCTGGTGCCCAGCGAGCTCTTCCCGCTGGAGAT

Homology of Contig U35_1663 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g24924.1	512	1e-53	protein\|transporter family protein, putative, expressed
Brachypodium v1_2	Bradi4g28000.1	532	6e-84
Arabidopsis v10	AT1G77210.1	504	2e-60	\| Symbols: STP14, AtSTP14 \| sugar transporter 14 \| chr1:29009036-29010980 REVERSE LENGTH=504