barSeed - Barley Seed Development Database

Probe CUST_5639_PI390587928

Source Contig U35_1667

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5639_PI390587928	Hv_44K_v2	GAGGACTACATATTCACTCCTGTATTTGACATCAAGTTACTATTTTCCACTTTTCCTGTT	2107	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69668.4	3844	2e-24	3746 - 3805	100	60 / 60	plus	ABC05342 ABC38388
MLOC	MLOC_69668.2	3390	2e-24	3286 - 3345	100	60 / 60	plus	ABC05342 ABC38388
JLOC1	JLOC1_46182.1	3358	8e-25	3248 - 3307	100	60 / 60	plus
Harvest21	ABC05342	2192	3e-25	2108 - 2167	100	60 / 60	plus	ABC05342
Harvest35	U35_1667	2216	3e-25	2108 - 2167	100	60 / 60	plus

Contig Sequence (2216 bp)

>U35_1667 2216 Hv_44K_v2
TGACACGGGTGGCAAAAACACCTGCCCAGAAACTTGAAATTCTTTTTCATGTGATCTCTG
CCCAGTTTGATGTCAACCCTAGCTTACTTGGTCATATGCCAGTCAATGTGTGGAAGAAGT
GTGTTAATAATATGCTTCTCGTGCTTGATATTCTGCAACAGTACCCTAATATTGTAGTGG
ACAACTCAGTGGAGGCTGATGAGAAGGAAACTCAGAAGGGTGCCGACTATGATGGAACAA
TCCATGTTACTGGTGACCTAGTTGCATTCCTGGAGAGAATTGACTCGGAGTTTTTTAAGA
GTTTACAGTGCAGTGATCCATATACCAAAGATTATGTTCAGAGGCTTAGAGATGAACCCT
TGTTTTTGGTGCTTGCACAGAATGTGCAAGAGTACCAGGAAAGGGTTGAGAATCACAAGG
CTGCTGCGAAGGTTGCATTGCGTCGTGTTGAACTAGTCTACTACAAACCTCAAGAAGTAT
ATGATGCAATGAGAAAGCTGGCTGAGCAAACTGAGGTTATCATGGAGGATGGAGATATTG
AGGGCAACGAGGAGCATCAAGCAGCTGATGACAATAGAGGACCACCACCTTTTATTGTGA
TTCCGGAGGTTGTACCTAGGAAGCCTACTTTCCCAGAGAGTGGCAGAGTCTTGATGGATG
GACTGATGTCTCTAATTTACAAGTATGGAGATGAAAGAACCAAAGCCCGGGCAATGCTGT
GTCACATATATAACTATGCAATCTCTGATGAGTTTTCAGTTGCTCGTGACTTGCTCTTAA
TGAGTCGTTTACAAGATGGGATTCAACTTATGGACATCTCATCTCAGATTTTATACAACC
GGGTCATGGCCCAACTGGGGTTATGCGCCTTCCGGGCTGGTTTGATAGCTGATGCTCATG
GTTGCCTGTCTGAGCTATATGCAACTGGAAGAGTGAAGGAATTGCTTGCACAAGGTGTCC
AGTATAGTCGGTACCACGAAAGAACTCCTGAACAGGAAAGACTTGAGAGGAGAAGGATGA
TGCCTTACCATATGCATATAAACCTTGAACTTTTGGAAGCCACACACTTGATCTGTGCAA
TGCTAATTGAGGTCCCGTATATGGCTTCCAGTACTTATGACAAGCGGAGGCCTATGAGCA
AAACATTCCGCAGGCTTCTTGAAATGAGTGAGAGGCAGACTTTTGTTGGACCTCCAGAAA
CGGTGAGGGATCATGTAATGGCTGCCACGAGGGCCCTCAATAAGGGTGACCATGAAAAGG
CTTTCAGTGTCATCAGTTCTCTGGATACCTGGAAACTTTTGAGGAACAAGGAGCATATCC
TTGAGATGCTGAAGCTTAAAATCAAGGAAGAGGCTCTTAGAACCTATCTCTTCTCTTACT
CGTCTTGCTATGAGTCCCTGAGCCTTGATCAGCTCACTACTATGTTTGACCTCAGCGAGG
CACACGCTCACAGTGTTGTTAGCAAGATGATGATGCACGACGAGCTTCATGCAAGCTGGG
ACCAGCCAACAAAGTGCATTGTATTCCAGAACGTGGATCAAACCAGGCTGCAGGGACTGA
TCTTCCAGATGACTGATAGGCTCTCTGTCCTTGTGGAGAGCAACGAGAGGGCGTATGAGG
CCAGGACTGGTGGTGCCCTTGAGGGTGCACCACCCAGGCGCAGGGGTGATCAAGACTCGT
CCAATATGGGAAAGTGGCAGGAGAACTTTGTATCGTCACAAGGCGGTCGCCGCGGCGGTG
GGAGGTCTGGCTATGCTGGCAGAGGAGGCTCTGGGCAGGGCGGTGGGTACCAAAATGACA
GGGGTGGCCAGGGTTCCCGTGGCGGCTATGGTGGTGGTTCTCGGTTCCAGGATGGAAGGT
CTCGCAACCAGTCTGGTTCCTCGTCTAGAGGGGATGGCAATGGACGCATGGTGAACCTAA
ACAGGCCCGGTAGAAATTAGAAGTCTGATAGATCTGCGATAAATTCCGAGCAAGGTTGTC
TTGAAGCATTGTTTCCGCACCGTTCAGAACTTGTCATCGTTTGCTATATTTTTGTAGCTT
CTGTTATCTGTCATAAATCTTACCCAGAAGTCTTGAGTAATAGTTGTCTGGCTTGTATCA
TGGGAGCGAGGACTACATATTCACTCCTGTATTTGACATCAAGTTACTATTTTCCACTTT
TCCTGTTTCTAAAAAAAAAAAAAAAAAAATCTTCCGGTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1667 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g03230.2	937	protein\|eukaryotic translation initiation factor 3 subunit C, putative, expressed
Brachypodium v1_2	Bradi4g30730.1	936
Arabidopsis v10	AT3G56150.1	900	\| Symbols: EIF3C, ATEIF3C-1, EIF3C-1, ATTIF3C1, TIF3C1 \| eukaryotic translation initiation factor 3C \| chr3:20833790-20836820 REVERSE LENGTH=900