barSeed - Barley Seed Development Database

Probe CUST_5638_PI390587928

Source Contig U35_1668

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5638_PI390587928	Hv_44K_v2	TGTGTGTCTACAACGACCATGTCGCTCAAATAAAACTTGTTTCCCGTGATAGTTAAAAAA	569	GeneList: lightgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.340	0.340	0.435	2.545	4.742	7.792
Raw	1546.895	2425.471	2884.723	26480.233	17037.967	30761.567

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_761.1	999	3e-22	255 - 310	100	56 / 56	minus	ABC04483 ABC47250
JLOC1	JLOC1_460.1	1064	1e-22	386 - 441	100	56 / 56	minus
Harvest21	ABC04485	484	3e-25	414 - 473	100	60 / 60	plus
Harvest21	ABC04483	803	3e-25	570 - 629	100	60 / 60	plus	ABC04483
Harvest35	U35_1668	640	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_1668 640 Hv_44K_v2
GTGACGAGACACACACATACACACACACATCCACCACCAGTCGATCGATCCGACAGGTAG
CTAGCCATGGCCGCCGGGAGGAAGGTGATGAGCAACGCCGGCGTCGCCGCCGCGCTGGTG
GTGCTGCTGGTCGTGGCGGCGGCGTCGAGCGTGGCCGGGGTCTGCAAGGTGGACACGGGC
AGCATGGTGAGAAACTGCAGGACCTACTGCACGGTGGGCAGCACGGAGGCCAGTCCCAGC
AGCGCGTGCTGCGGGGCTGTGCGCGGCGGTGACTTCCACTGCCTCTGCCAGTACAGGAGC
GTGCTGCCCAACGACATCGACGCCAACCGCGCCATGCAGATCCCCGGCAAGTGCGGCTAC
GGGGCGGCCAACTGCTAGTTTCCGTCACGCGCTACCAGCAGCTCGATTCGCGCCGGCGTG
GTCTGCCCGTCGCCGGTTGCACGAGTAGATCATAACGTTGTGTTTTGCTGTCAACTTTGG
CTGATCGGATGGTGCTCCTGCGTGGGTGCATGCTCTCTGTTGGCCATGCTACCTTTGTAT
CCTCTTCTGCTTTTCGCAGGTCATGTCGCTGTGTGTCTACAACGACCATGTCGCTCAAAT
AAAACTTGTTTCCCGTGATAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1668 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None