barSeed - Barley Seed Development Database

Probe CUST_5635_PI390587928

Source Contig U35_1671

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5635_PI390587928	Hv_44K_v2	GTTTAGACGTGTCGCAAGTTTTTTCTTTCTTTATTTTTGGAAGACAAAATGTGTCTCGGT	1463	GeneList: lightyellow MasterList: Sugar_nucleotide_interconverters_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.211	0.201	1.052	2.164	1.272	1.417
Raw	932.825	1381.501	6521.597	20276.810	4305.600	5228.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

This probe has no hits to the blast databases

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence

Contig Sequence (1612 bp)

>U35_1671 1612 Hv_44K_v2
GGGATCCCGCGACCCAGCCGACGGTTTTCCCTTCCCCCCTCTCTGACCTGTCCCTCCCTC
CATCCTCAATTCCCACCGCCCCAATTCTCCTCCTCCTCGGCGCCCGCCGTTGACGAGGCC
CCGGAGGAGGACGACTCGGGCGCACCGCTGTCTTCTGCTCGGCCGGCCGCCCTCTTGTCG
AGTTTCACAGAGTGCGGAGGTTGAGTTAGGAGGACTGCGACCATGAAGGCCCTCATTCTT
GTGGGAGGATTCGGCACCCGCCTGCGGCCGCTGACGCTCAGCGTGCCCAAACCGCTCGTC
GATTTCGCCAACAAGCCCATGATCCTGCACCAGATCGAGGCTCTGAAAGATGTGGGAGTC
ACAGAAGTTGTCCTGGCGATCAATTACCAGCCAGAGGTCATGCTCAACTTTCTCAAGGAC
TTCGAGAGCAAGCTTGGCATCAAGATCACCTGTTCCCAGGAGACAGAGCCAATGGGAACC
GCCGGACCGCTGGCCCTGGCCCGCGACAAGCTCGACGACGGATCCGGCGAGCCTTTCTTC
GTCCTCAACAGTGACGTGATCAGCGAGTACCCGTTCGCAGAGCTCATCGAGTTCCACAAG
TCCCATGGCGGCGAGGCCACGATCATGGTCACCAAGGTGGACGAGCCTTCCAAGTACGGC
GTGGTGGTGACGGAGGAGGAGACCGGGAAGGTGGAGCGGTTCGTGGAGAAGCCCAAGGTG
TTCGTGGGCAACAAGATCAACGCCGGCATCTACCTGCTGAGCCCGTCGGTGCTGGACCGC
ATCGAGCTGAAGCCGACGTCCATCGAGAAGGAGGTGTTCCCGCGTATCGCCGCGGACAAG
GGCCTGTTCGCCATGGTGCTGCCGGGGTTCTGGATGGACATCGGGCAGCCGAGGGACTAC
ATCACGGGGCTGAGGCTCTACCTGGAGTCCCTGAGGAAGAGGTCACCGGCGAGGCTGGCC
TCCGGCGCGCACGTCCTGGGCAACGTGCTGGTCCACGAGACGGCGACGATCGGGGAAGGG
TGCCTGATCGGGCCGGACGTGGCCGTCGGCCCCGGGTGCGTGGTGGAGGCCGGGGTGCGG
CTGTCGAGGTGCACCGTGATGCGTGGCGCGCGCGTGAAGAAGCACGCGTGCATCTCCGGC
AGCATCGTGGGGTGGCACTCGACGGTGGGCAAGTGGGCGCGCGTGGAGAACATGACCATC
CTCGGCGAGGACGTGCACGTCTGCGACGAGGTGTACAGCAACGGCGGCGTCGTGCTCCCG
CACAAGGAGATCAAGTCCAGCATCCTCAAGCCCGAGATTGTCATGTGAGTGTGGCGATCG
AGCCGCCGTTCCCGCGCCCGCGCCACATGGTGAAAAACGGTCGTATATTTCTTCATGTGT
TCGTTGTTTATTATTGGTCGCCGAGCTGTTTGTCTGCAAGAGTTGTCCATCCAACTGCCA
AGTGTTCATCAGGCTCTATGTATGTTTAGACGTGTCGCAAGTTTTTTCTTTCTTTATTTT
TGGAAGACAAAATGTGTCTCGGTTAAATTTAAGCCCGGGCTTTAATTTGTAGATAGGTGT
CAGATGAATGGGAATAAAGCATCAGTTTTACTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1671 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g16150.3	362	protein\|mannose-1-phosphate guanyltransferase, putative, expressed
Brachypodium v1_2	Bradi1g66930.1	362
Arabidopsis v10	AT2G39770.1	361	\| Symbols: CYT1, VTC1, SOZ1, EMB101, GMP1 \| Glucose-1-phosphate adenylyltransferase family protein \| chr2:16589401-16590741 FORWARD LENGTH=361