- Probe CUST_5631_PI390587928
- Source Contig U35_1675
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5631_PI390587928 | Hv_44K_v2 | GTTGTTGGAGTCTGTAAGTACCCATGAATAATGTATTTAGCTAGTACCATGAGAGTTAAT | 384 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.510 | 1.872 | 1.136 | 0.767 | 0.469 | 0.859 |
| Raw | 171.306 | 335.600 | 173.501 | 193.888 | 38.907 | 81.513 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_22626.3 | 2044 | 2e-24 | 1872 - 1931 | 100 | 60 / 60 | plus | ABC04891 |
| MLOC | MLOC_22626.4 | 2605 | 2e-24 | 2458 - 2517 | 100 | 60 / 60 | plus | ABC04891 ABC26639 |
| MLOC | MLOC_22626.1 | 2001 | 2e-24 | 1842 - 1901 | 100 | 60 / 60 | plus | ABC04891 |
| MLOC | MLOC_25717.1 | 516 | 7e-23 | 386 - 445 | 98 | 59 / 60 | plus | ABC04891 |
| JLOC1 | JLOC1_15677.1 | 2010 | 8e-25 | 1835 - 1894 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC04891 | 1877 | 3e-25 | 1699 - 1758 | 100 | 60 / 60 | plus | ABC04891 |
| Harvest35 | U35_1675 | 564 | 3e-25 | 385 - 444 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_1674 | 2018 | 3e-25 | 1699 - 1758 | 100 | 60 / 60 | plus |
Contig Sequence (564 bp)
>U35_1675 564 Hv_44K_v2 ATTTTAATCGAGGCGATGACCTACCGAGTCGGCCATCACTCGACATCCGACGATTCAACC AAGTACAGGCCGGCTGATGAGATGGAGCATTGGCGAACAGCAAGGGATCCCGTCTCCAGG TACAGAAAATGGGTTCAGGGGAATGGATGGTGGTGCGATACTCAAGAGTCTCAACTCAGG AACAATGTGAGGCAAGAGCTCCTGCAAGCCATTCAGGTGGCCGAGAGGATGCCAAAACAC GGGCTTGCGGAGCTCTTCACAGATGTTTATGATCAAATCCCTTCCAACCTTCGCCAGCAA GAGCGGTCGCTGCTGGATACCATCAAAAGGCACCCTGCAGAGTATCCGGCTGATGTGCCT GTTTAGTAGCCTTAGCTCTGCGATGTTGTTGGAGTCTGTAAGTACCCATGAATAATGTAT TTAGCTAGTACCATGAGAGTTAATATTGATTATAGCTTGAATTGTATGTAACTTGAAAAG GAGGAATAAACTGCTCATCCAAAAAATCTTTGAAAGAAATAATACAAGAGATTAGCTGTT GCTTACAAAAAAAAAAAAAAAAAA
Homology of Contig U35_1675 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os12g08260.3 | 487 | 8e-70 | protein|dehydrogenase E1 component domain containing protein, expressed |
| Brachypodium v1_2 | Bradi4g40870.2 | 471 | 1e-73 | |
| Arabidopsis v10 | None |