barSeed - Barley Seed Development Database

Probe CUST_5625_PI390587928

Source Contig U35_501

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5625_PI390587928	Hv_44K_v2	TAGTGGAAGATGCCATGATATGCAAAGCTAGAGCTGTATATGTACTACATCAATCAAATC	1465	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66722.1	2988	2e-24	76 - 135	100	60 / 60	minus	ABC02490 ABC02491 ABC02492 ABC02499
JLOC1	JLOC1_44006.1	2956	8e-25	2843 - 2902	100	60 / 60	plus
Harvest21	ABC02491	1549	3e-25	1466 - 1525	100	60 / 60	plus	ABC02491
Harvest35	U35_501	1553	3e-25	1466 - 1525	100	60 / 60	plus

Contig Sequence (1553 bp)

>U35_501 1553 Hv_44K_v2
CCGACCCCTCCGACCCTTTGCTCATCAACTGGACCAAGTATGACAACAACCCGGTGATGT
ACCCGCCGCCGGGCGTCGGGGAGAAGGACTTCAGGGACCCGACCACTGCATGGTTTGATG
GCTCCGACGACACATGGCGGCTTGTTATCGGCTCCAAGGATGATCGCCATGCCGGCATGG
TGATGACTTACAAGACCAAGGATTTCATCGATTATGAGCTTGTCCCCGGGTTGCTTCACC
GTGTACCGGGGACGGGCATGTGGGAGTGCATCGATTTATACCCGGTTGGCGGTGCAAGGG
GCATCGATATGACAGAGGCAGTGGCGGCCGCGTCCATGAATGCGGGCGACGGTGTTTTGC
ACGTGATGAAGGAGAGCTCGGACGATGACCGGCACGACTACTATGCGTTGGGGCAATACG
ACGCGGCAAAGAACATGTGGACCCCACTGGACACCGACGCCGATGTTGGTGTCGGGCTGA
GGTATGACTGGGGAAAGTTCTACGCGTCTAAGACGTTCTATGATCCAGCAAAGAAGCGGC
GGGTGCTATGGGGGTGGGTCGGCGAGACCGACTCTGAGCGCGCCGACGTCGCCAAGGGAT
GGGCGTCGCTCCAGTCGATCCCTCGGACGGTGGTGCTGGACACCAAGACGGGAAGCAACC
TCCTACAGTGGCCGGTGCGGGAGGTGGAAACGCTCCGGACCAACTCCACCAACCTCGGCC
GGGTCACCATCGACCACGGCTCCGTCTTCCCGCTCAGCCTTCACCGTGCCACTCAACTCG
ACATCGAGGCCTCATTCCACATCGACCCGCTAGATGTCGCCGCAGCCAACGAGGCCGACG
TCCGCTACAATTGTAGCACCAGTGGCGGGGCGGCGGGACGAGGCGCCCTCGGACCCTTCG
GCCTGCTCGTGCTCGCCGATACCAGGCACCACGGTGGTGATGCGGAGCGGACCTCCGTCT
ATTTCTATGTATCGAGGGGCCTCGACGGAGGCATGCGCACACACTTCTGCCACGACGAGA
CGCGTTCGTCTCGTGCCAATGACATTGTCAAGAGGGTCGTTGGCAACACTGTGCCGGTGC
TGAACGGTGAGGACCTGTCAGTGAGGGTGCTGGTGGACCACTCCATCGTAGAGAGCTTTG
CAATGGGCGGGAGGTCCACGGTGACGTCACGGGTGTATCCGACCGAGGCCATCTATGCCA
ACGCTGGGGTGTACCTCTTCAACAACGCCACCGGCGCCCGGGTCACTGTAACCAGCCTCG
TCGCCCACGAGATGGACTCCTCCTATAACCAGGCCTACGTCGCCTCGATGTAGAATGAAA
ACAGAAAGATCATTTTTTTGATAGCATATACATATATGTGTAATTTCCTTTCTGATTTTC
TCCTCACTCCCGCTATCTTTGTTTCCCTTTTCATTTTTATTATGTCTATTCATTGTCAAG
GTCTTCCAAAAAGTTGTAGTTGAGCTAGTGGAAGATGCCATGATATGCAAAGCTAGAGCT
GTATATGTACTACATCAATCAAATCAATTTTTATAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_501 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g01590.1	663	0.0	protein\|glycosyl hydrolases, putative, expressed
Brachypodium v1_2	Bradi3g00910.1	672	0.0
Arabidopsis v10	AT1G62660.1	648	1e-149	Glycosyl hydrolases family 32 protein \| chr1:23199949-23203515 FORWARD LENGTH=648