barSeed - Barley Seed Development Database

Probe CUST_560_PI390587928

Source Contig U35_32068

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_560_PI390587928	Hv_44K_v2	AGTTACTTATGAGCTTCATCACACCTAGCCGACTCGTGTCTACTGTTGCTGCTTCTGCAT	447	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.252	4.050	1.470	0.622	0.131	0.140
Raw	2039.423	4209.924	1274.971	925.905	61.020	75.236

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_32068	507	3e-25	448 - 507	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_32068 507 Hv_44K_v2
ACCACCACCACCACACAAGCCAATCAAGCTCTCTCAGCTCCTGCCTAGCTAGCTCCACGG
TTTCCAGCAAGCAAGCCGAAGCACGAGATCCTCCATGGCACGCGTGGCACTGGTCGCCGT
GTTCGCCGTGCTCGCGGCACTGGCGGTGGCGGAGATGGCGTCCGGGGCGGTGACCTGCGG
CGACGTGACGTCCTCCATCGCGCCGTGCATGTCGTACGCGACGGGGAAGGCGTCCGCGCC
GTCGGCGGGGTGCTGCAGCGGGGTGAGGAGCCTGAACGGCAAGGCGTCCACCGCGGCCGA
CCGGCAGGCGGCGTGCCGCTGCCTGAAGAACCTGGCCGGGTCGTTCAAGGGCATCGGCAT
GGGTAACGCCGCCGGTATCCCCGGCAAGTGCGGCGTGTCCGTCTCCTTCCCCATCAGCAC
CAGCGTCGACTGGCACAAGCTTCACTAAGTTACTTATGAGCTTCATCACACCTAGCCGAC
TCGTGTCTACTGTTGCTGCTTCTGCAT

Homology of Contig U35_32068 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None