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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5606_PI390587928Hv_44K_v2ACCGTGATCTTTCAAAGCCTATTGGAGCACTAAACCCAGCACGACTAAAAAAGTTCCAAG1121GeneList: skyblue3
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.3891.2451.4890.8860.5760.373
Raw 47.86157.44171.76360.19814.78110.632



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_2174.339192e-243496 - 355510060 / 60plus None
MLOCMLOC_2174.143122e-243425 - 348410060 / 60plus None
MLOCMLOC_2174.243092e-243422 - 348110060 / 60plus None
JLOC1JLOC1_1308.442958e-253414 - 347310060 / 60plus
JLOC1JLOC1_1308.343028e-253421 - 348010060 / 60plus
JLOC1JLOC1_1308.243028e-253421 - 348010060 / 60plus
JLOC1JLOC1_1308.143038e-253422 - 348110060 / 60plus
Harvest21ABC2050911813e-251122 - 118110060 / 60plus
Harvest35U35_976411813e-251122 - 118110060 / 60plus



Contig Sequence (1181 bp)

>U35_9764 1181 Hv_44K_v2
ACAAGTTGATGTGCTGAATCGGCATCGTGCATCAACTGGAGTTCGAGCATGGCGGCATCT
TCTTCACTGCCTGACAGAGATGGGAAGATTATATGGACCTTTTGAAGAACCCATGTGTAC
TCCTGATCGGATTTTCTGGAAATTAGATTTTACTGAAAGTTCTTCAAGAATGAGAAGATT
TATGAAAAGGAACTATAAGGGATCTGAGCATTTGGGTGCAGCTGCTGATTATGATGATCG
GAAGCTTCTTAGTGCTGCTGTGCAATCAAATGAACGCAACCCCAAGGGTGCAGATTCTTC
ATTAACAGACACTATTCCATCAACTGCGCCGGTAGTAATTGCTGAGGCCATGTCAGTGGA
TGACAGAAATGAGGACATTGAGCAGTTAGAATCTGACACTACTCACAACAGTGCTGATCA
ACTTCAGTCCTCATCAGCAGACCAACAATCCATGAAAAGATCAGTAGATTCAAGAAGTTC
TGGCATTTCTGCCGATCGCAATTTGGTTCGATCCACAGTTGTTGCACCTGGATATGTGCC
AACTGAAGCTGATGAGAGAATTATAGTTGAACTTCCATCATTGATGGTGCGACCATTGAA
AGTTGTGCGTGGAACCTTCCAAGTAACATCAAAGAGGATTAACTTTATAATTGATGAGCA
TGCAAGTGACAGTAATGTGGATGATCATGCATCCACTAGTAGCCAATGTTATCAGCAAGA
TAAAGATCGGAGCTGGTTGATCTCTTCTCTACATCAGATATATAGCAGGCGGTACTTGTT
ACGACGAAGTGCTTTGGAATTATTTATGGTAGACAGGTCAAATTTCTTTTTTGATTTCGG
GGATATGGAAGCACGAAAAAATGCTTATCGGGCGATTATTCACACCAAACCACCTAATTT
GAATGACATTTTTCTAGCTACCCAGAGAGCCGAGCAAATCCTTAAAAGAACTCAGTTGAT
GGAGCGCTGGGCTAACTGGGAGATTAGCAATTTTGAGTACTTGATGGAACTGAACACTCT
TTCTGGGCGCAGTTATAACGACATAACTCAGTATCCTGTTTTCCCCTGGATAATAGCTGA
TTACCAGTCTAAAGTTTTGAATCTGGATGATCCTTCTGCATACCGTGATCTTTCAAAGCC
TATTGGAGCACTAAACCCAGCACGACTAAAAAAGTTCCAAG



Homology of Contig U35_9764 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os04g46894.121980.0protein|beige/BEACH domain containing protein, expressed
Brachypodium v1_2Bradi5g17947.129090.0
Arabidopsis v10AT2G45540.230013e-126WD-40 repeat family protein / beige-related | chr2:18757881-18772229 REVERSE LENGTH=3001