barSeed - Barley Seed Development Database

Probe CUST_5600_PI390587928

Source Contig U35_9770

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5600_PI390587928	Hv_44K_v2	CGAGGAGATCTCTGCCGATGGCGACGCGCTCGACGCCGCGGAGCGCGCCGTCGCACAAGC	350	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368141	2075	2e-24	351 - 410	100	60 / 60	plus	ABC11584
MLOC	MLOC_81751.1	1488	2e-24	183 - 242	100	60 / 60	plus	ABC11584
JLOC1	JLOC1_54383.1	1486	8e-25	181 - 240	100	60 / 60	plus
Harvest35	U35_9770	499	3e-25	351 - 410	100	60 / 60	plus

Contig Sequence (499 bp)

>U35_9770 499 Hv_44K_v2
CAGCCACACGCGAACCCTAGGATAGACATGGCCAAGAAAAAGTCCTCCTCCGCCGCCGCC
GCCGCCGCCAACGGCAGCGGCAACGGCAACGGCAACCACGCCACCGCCGCCGCCAACGGC
AATGGCGACGGCAATCACGCCGCCCCCGCCAACGGCAACGGCAATCACGCCGCCCCCGCC
AACGGCAACGGCAACCACGCTGCCCCGGTGCTGGCGCCGGGGATGGAGGAGAAGCGCGAC
TCATCGCCGGAGCGGGACCGGAAGGCGCAGCAGCTCAAGACGCTCAACTCCATGCTCCTC
AAGGAGGCGGTCGAGCGGCGCGGCCAGGTGGCCGCGCTCACGGCGCGCCTCGAGGAGATC
TCTGCCGATGGCGACGCGCTCGACGCCGCGGAGCGCGCCGTCGCACAAGCCGCCCTCGCC
GCGCCCCTCCGCGCCGCAGCCGACGAGGCATCTGCTCTCCGCGCACGCCTNGCCGCTGTC
CAGGATTCGCTCCGGCTCG

Homology of Contig U35_9770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None