barSeed - Barley Seed Development Database

Probe CUST_5594_PI390587928

Source Contig U35_9776

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5594_PI390587928	Hv_44K_v2	CTGTGCAAACCTAAGTGGTAATAGAGAAGAAAGATAAGCACCATGCTGACCGGCTCCAAA	538	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.672	0.855	1.253	1.449	0.900	1.061
Raw	272.131	546.625	705.177	1205.226	275.402	353.122

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_47088.4	2946	3e-22	2768 - 2823	100	56 / 56	plus	ABC26520
JLOC1	JLOC1_30402.1	2816	1e-22	2661 - 2716	100	56 / 56	plus
Harvest35	U35_9776	612	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (612 bp)

>U35_9776 612 Hv_44K_v2
GATCTCTCGGAGGCAGGGAACCAGAAATCGGCCTCCCACCATAAGAGCTCTTGAAGCAGT
TGCTCTTGGTCTCCTCGGAGGCACAAAGCGCAAGGGTGATGCAAGAAGCTTGACGACAAG
AAGACCTCGGCGGGCTCGCAAGACCGAAGACTGAATGTGGGCATCTCCACTAGTAGTAGA
GAGAAACCCATATAATTGGAGGACAGAGCACAAGATGAGCAGATTGTCTTGCGTGGCTTG
GATATGTGTAAAGTGTGAAAAGGATATAGCAGGATTTTGACGCTGGGGTGGTACATTTCA
CAATCAGCATGAGCCATCCGAAGCATCCGTCGGTTTACACATCCTGCTATATAGCATGCT
TCGGATATAGCAGGAGGAGCTCACTGTTCCCTCATCATGTTTACAATGCAGGCATTGGTG
ATTGGTGATACCTTGTTCTTCCTTTCTTTCTAGAAACTCGGATGCATGAGAAAGAATTTT
ACAATTCATATAGTTATTATTTCTATTTAGTTTATAGAAGGGTTTCATATCTAGCATGCT
GTGCAAACCTAAGTGGTAATAGAGAAGAAAGATAAGCACCATGCTGACCGGCTCCAAAAA
AAAAAAAAAAAA

Homology of Contig U35_9776 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None