barSeed - Barley Seed Development Database

Probe CUST_5591_PI390587928

Source Contig U35_9780

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5591_PI390587928	Hv_44K_v2	GGCCGAGTCGGACGCCACGCCGTGCGGCTGGCCGCACGTCGAGTGCGACCCGGCCACCTC	271	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354249	3881	2e-24	419 - 478	100	60 / 60	plus	ABC48448
MLOC	AK356843	2534	2e-24	346 - 405	100	60 / 60	plus	ABC48448
MLOC	MLOC_52166.1	4031	2e-24	589 - 648	100	60 / 60	plus	ABC48448
JLOC1	JLOC1_33388.1	3902	8e-25	458 - 517	100	60 / 60	plus
Harvest35	U35_9780	391	3e-25	272 - 331	100	60 / 60	plus

Contig Sequence (391 bp)

>U35_9780 391 Hv_44K_v2
ACCTCACTAGATCTGCCCGCCGTCGTCGATCGCCACCCCCATATCACTCCACTCCACCAT
TGCCATCATCCCACTGCCACCCCATCCCACGCCGGCAGCGTTAGCTAGCAATGGCGGCTC
CGACCACGGTGCTCCTCCTCCTGCTCCTGGTGTCCTCCTGCGCCGTCGGGGCGTACGCGG
ACGCGCTGCCGGAGCCGGTGAACGAGGAGGTGCTGGGGCTGGTGGTGTTCCGCTCCGCCC
TGACGGACCCCTCCGGCGCGCTCGCCGCGTGGGCCGAGTCGGACGCCACGCCGTGCGGCT
GGCCGCACGTCGAGTGCGACCCGGCCACCTCCCGCGTGCTCCGCCTCGCGCTCGACGGCC
TCGGCCTCTCCTCCGACTCCGGCGTCCCCCG

Homology of Contig U35_9780 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None