barSeed - Barley Seed Development Database

Probe CUST_5583_PI390587928

Source Contig U35_9789

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5583_PI390587928	Hv_44K_v2	TATATGCTATGGATTATCCTGGTTTTGGATTATCGTATGGTCTTCATGGCTACATCGCAA	538	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56950.8	1452	2e-24	856 - 915	100	60 / 60	minus	ABC17954
MLOC	MLOC_56950.6	1338	2e-24	913 - 972	100	60 / 60	minus	ABC17954
MLOC	MLOC_56950.4	1577	2e-24	977 - 1036	100	60 / 60	minus	ABC17954
MLOC	MLOC_56950.5	2265	2e-24	1665 - 1724	100	60 / 60	minus	ABC17954
MLOC	MLOC_56950.1	1310	2e-24	1057 - 1116	100	60 / 60	minus	ABC17954
MLOC	MLOC_56950.9	686	2e-24	433 - 492	100	60 / 60	minus	ABC17954
MLOC	MLOC_56950.7	1925	2e-24	1483 - 1542	100	60 / 60	minus	ABC17954
MLOC	MLOC_56950.3	1698	2e-24	982 - 1041	100	60 / 60	minus	ABC17954
MLOC	MLOC_56950.2	2156	2e-24	1578 - 1637	100	60 / 60	minus	ABC17954
JLOC1	JLOC1_36860.5	1727	8e-25	643 - 702	100	60 / 60	plus
JLOC1	JLOC1_36860.4	1734	8e-25	643 - 702	100	60 / 60	plus
JLOC1	JLOC1_36860.3	1270	8e-25	186 - 245	100	60 / 60	plus
JLOC1	JLOC1_36860.2	1246	8e-25	155 - 214	100	60 / 60	plus
JLOC1	JLOC1_36860.1	1488	8e-25	397 - 456	100	60 / 60	plus
Harvest21	ABC40768	405	3e-25	333 - 392	100	60 / 60	plus
Harvest21	ABC19236	598	3e-25	539 - 598	100	60 / 60	plus
Harvest35	U35_43736	405	3e-25	333 - 392	100	60 / 60	plus
Harvest35	U35_9789	598	3e-25	539 - 598	100	60 / 60	plus

Contig Sequence (598 bp)

>U35_9789 598 Hv_44K_v2
GCACCACCCCCCTGTCCCTCTCCTTTGTCCTCTCAGAGACTGTAGGTACTCAAGTGTCCT
ACCGCCCACCGCGCTGTTCGAGCAAGCATCCATCACATGGCGGCGATCTCGCAGTTGCAG
CGCATCGCGGGGCCGCGCCATGCCGGGGCGCCGCGGGCGGGGACTGTGAGGCGCGCGTCG
GTCGCGGTCGCCGCAGGGAAGGCGCCGTTGCCGAGGCTGGAGGGCGCCAGCGAGGAGCTG
AGGGCCGCGGCGGCGCAGAGCCTCGACTGGGCGCCGGCGCGCCGGCGCGTGCGCGCGGCC
TTCGCGCCCGTGCTCCCCACGCTCGACCACTGCCTGTTCAAGATGGCGCCCAAGGGAATC
CAGATGGAAGAGAATTTTGAGACCAACTCAAAGGGAGTTGAAATATTCTGGAAGAGTTGG
CTGCCTAGGGAGGGCACTCCCACCAAGGCAGCGCTTTTCTTCTGCCATGGGTATGGAGAT
ACCTGCACTTTCTTTTTTGAAGGGGTCGCTAAGAGAATAGCCGCTGCTGGATATGCAGTA
TATGCTATGGATTATCCTGGTTTTGGATTATCGTATGGTCTTCATGGCTACATCGCAA

Homology of Contig U35_9789 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g49380.2	248	3e-79	protein\|lipase, putative, expressed
Brachypodium v1_2	Bradi2g46910.1	378	2e-83
Arabidopsis v10	None