barSeed - Barley Seed Development Database

Probe CUST_5582_PI390587928

Source Contig U35_9790

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5582_PI390587928	Hv_44K_v2	ACTAGGAATACATAAGAAGCCGGTCGGTCTGCTGAACGTTGACGGATTCTACGACCCACT	578	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.247	0.265	0.332	2.263	2.576	4.215
Raw	7.839	12.499	16.188	166.932	67.713	119.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
JLOC1	JLOC1_41794.1	1131	8e-25	403 - 462	100	60 / 60	plus
Harvest21	ABC19060	638	3e-25	579 - 638	100	60 / 60	plus
Harvest35	U35_9790	638	3e-25	579 - 638	100	60 / 60	plus

Contig Sequence (638 bp)

>U35_9790 638 Hv_44K_v2
GCGCGTAGCCTCTCCCTCTCCCTCTCCTTCCCCGACAACAAATCCCGCCCGCGCGCGCCG
TCACGCACGCACGGGCGCGATCGCCTTGCCGCCAGGACCATGAGCATCACGGCGGCGGCG
GCGGCGGTGCCACTGGACACGCCCGCGGAGACGGTGCCGGGGCTGGCGCCGCCGGAGCCG
AGCCGCGGCGCCGGGGAGGACCGGGCGTCGCGGTTCCGGCGGATCTGCGTCTACTGCGGC
AGCGCCAAGGGCCGCAAGGCCAGCTACCAGGACGCCGCCGTCGAGCTCGGCAAGGAGATG
GTGGAGAGGGGCATAGACCTGGTCTACGGGGGCGGCTCCATCGGCCTCATGGGCCTCGTC
TCCAATGCCGTCCACGCCGGCGGCCGACATGTCATCGGGATCATCCCAAGATCACTCATG
CCCAGAGAGGTAACTGGGGATCCTGTTGGTGAAGTTCGAGCTGTTTCTGGCATGCACGAG
AGGAAGGCCGAAATGGCCCGGTTTGCTGATGCTTTTATTGCCTTACCAGGCGGCTACGGA
ACCTTGGAGGAGTTGCTTGAAGTGATCACGTGGGCGCAACTAGGAATACATAAGAAGCCG
GTCGGTCTGCTGAACGTTGACGGATTCTACGACCCACT

Homology of Contig U35_9790 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g40630.1	243	4e-98	protein\|uncharacterized protein PA4923, putative, expressed
Brachypodium v1_2	Bradi2g14470.1	283	2e-97
Arabidopsis v10	AT5G06300.1	217	1e-80	Putative lysine decarboxylase family protein \| chr5:1922042-1925278 REVERSE LENGTH=217