- Probe CUST_5580_PI390587928
- Source Contig U35_9793
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5580_PI390587928 | Hv_44K_v2 | CCTCCACAAAATGACAGATGAGATCATTAGCATTGATCCAAATCGCTCCATCAGTTCTCC | 693 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.560 | 0.691 | 1.584 | 1.874 | 0.967 | 0.916 |
| Raw | 18.828 | 33.792 | 72.139 | 131.592 | 24.020 | 25.077 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65109.9 | 1905 | 3e-21 | 670 - 729 | 97 | 58 / 60 | plus | ABC33961 |
| MLOC | MLOC_65109.3 | 4021 | 3e-21 | 3078 - 3137 | 97 | 58 / 60 | minus | ABC33961 |
| MLOC | MLOC_65109.5 | 4083 | 3e-21 | 3018 - 3077 | 97 | 58 / 60 | minus | ABC33961 |
| MLOC | MLOC_65109.6 | 4181 | 3e-21 | 3105 - 3164 | 97 | 58 / 60 | minus | ABC33961 |
| MLOC | MLOC_65109.8 | 3140 | 3e-21 | 2268 - 2327 | 97 | 58 / 60 | minus | ABC33961 |
| MLOC | MLOC_65109.4 | 4253 | 3e-21 | 3404 - 3463 | 97 | 58 / 60 | minus | ABC33961 |
| MLOC | MLOC_65109.7 | 4007 | 3e-21 | 2683 - 2742 | 97 | 58 / 60 | minus | ABC04805 ABC33961 |
| JLOC1 | JLOC1_42819.4 | 3811 | 2e-21 | 807 - 866 | 97 | 58 / 60 | plus | |
| JLOC1 | JLOC1_42819.1 | 3617 | 2e-21 | 613 - 672 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC21305 | 786 | 3e-25 | 694 - 753 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_9793 | 786 | 3e-25 | 694 - 753 | 100 | 60 / 60 | plus |
Contig Sequence (786 bp)
>U35_9793 786 Hv_44K_v2 GCCCAAAGCTGAACAGAGAGACCCAAACCCCGCAGCCATGGCCATGGAGCGACCTGTGCG GCTGGTGCTGGATGCGTCCCTCCTCCTCGATCCCGTCGTCTCCGGCGGTGCAGGGCCGCA GGAGGCTGCGCCGGTGCCCACGCTGCGTCCCGGGGCGGAGGCGCTGCTGCGGCGGCTGCG CCACTCCAATCTGGGCGTGGCAATTTGCCATCCGGAGGAAATGCCAACTGCTGTGTCAGG CTTTCTTGAAATGACAGCAAACTTGTACTCCTTTGGATATATATCACTACCTGCTCCCAC TGGGAATAACTTACTAAATGAGTCGGTGTTAGAGTGGAGCGGATCAAGTTGTTGTTTTTA TGCTACTTCCAGAGTTGATGAAGATCTATTTTCTGAACTTCAGAGCCATAACTGGAGAGT TATTGCTGTAGATAATGAATGTGGAACGAAAGATTCGGGAGTTGTAAATATTGGCAAGCT TCAAGAGCTGCTTATCACTTTGAGTATTTTAATAAAAAAGGAAATGGCTAGTTCATCTGT TTTGATGGTTGGCTATGCAATGAAACCATCCCGTGAGGAAGACTTTGCCAAGAGAGGAGC ATTTCCCCTTTATCCTAGTGAAAATGGACTTATCTTTGTCCCACTCTCATTTGAACTTCC TTTAGCCTCTCAACTTAAAGAAGTTGACATAATCCTCCACAAAATGACAGATGAGATCAT TAGCATTGATCCAAATCGCTCCATCAGTTCTCCCAGNGGAATTTCATTTTCTGCAGGAAT GTCTGA
Homology of Contig U35_9793 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g34300.1 | 548 | 3e-111 | protein|Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed |
| Brachypodium v1_2 | Bradi4g35440.1 | 506 | 7e-130 | |
| Arabidopsis v10 | None |