barSeed - Barley Seed Development Database

Probe CUST_5569_PI390587928

Source Contig U35_14804

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5569_PI390587928	Hv_44K_v2	CTATTTGAACCGGCACCAAAGAAACAAAACCATTTATTCACCAGTGACATGGTTCATTTG	845	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69561.2	3455	2e-24	2926 - 2985	100	60 / 60	plus	ABC12925
MLOC	MLOC_69561.1	3197	2e-24	2870 - 2929	100	60 / 60	plus	ABC12925
Harvest21	ABC12925	1110	3e-25	846 - 905	100	60 / 60	plus	ABC12925
Harvest35	U35_14804	1364	3e-25	846 - 905	100	60 / 60	plus

Contig Sequence (1364 bp)

>U35_14804 1364 Hv_44K_v2
GCTCATTCAACGGCTAGGTAAAAGGCCTGGAGGCCCCCCAGAACTTCGGATCACAGCAAT
AGACACACCTCAGCCTGGTTTTCGCCCAGCAGAGCGCATCGATGAGATTGGAAGATATCT
AAGTGATTATGCTCAGACCTTCAAAGTTCCTTTCAAATACCATGGCATCGCATCTCAATT
TGAGGCTGTTCGGGTTGAGGATCTCCACATTGAGAAGGACGAGATTCTGATTGTCAACAG
CATGTTCAGGTTCAAGACTTTGATGGATGAGAGCGTGGTAGCTGAGAGTCCAAGGAACAT
GGTATTGAACACAATAAGGAAGATGAACCCACATGTGTTCATTCATGGGGTCACCAATGG
ATCCTATAATGCACCATTCTTCGTCTCGCGCTTCCGGGAGGCATTGTTCCACTTCTCTGC
TGCCTTCGACATGCTGGAGGCCAACATTCCCAGGGATAACGAGGAGAGGCTGCTCATTGA
GTCGGCTCTGTTTAGCCGGGAGGCGATTAATGTGATATCTTGTGAGGGAATGGAGAGGAT
GGAGAGGCCAGAGACCTACAAGCAGTGGCAGGTGCGGAATCAGAGAGCTGGGTTCAAGCA
GCTCCCGCTGGACCAGGAGATCATGAAGCGTGCCCGGGAGAAGGTGAAGTGCTACCACAA
GAATTTCATCATCGACGAGGACAACAAGTGGTTACTACAAGGATGGAAGGGGCGTATCCT
GTATGCCCTCTCAACATGGAAGGCGAATCCCCAATCTTCCTAGCTTCTGTAAATGGTGAC
CTGTTCATATTTTTGGACTCTAGAGCTGATTGTTCCTGGCCAACAACCCGTTAGTAGGTA
AAATGCTATTTGAACCGGCACCAAAGAAACAAAACCATTTATTCACCAGTGACATGGTTC
ATTTGTTTGTTGATGCAGATGATGAACCTGATTACTCTTCTGTAGCACCTGCCCGTTGTA
TGTGCCCATACACGGTTAGTTTTCACAGGAATAGTTAGTGCATTTTTGGTGGAGCAGGCT
TAGTTATGTTAGATATAGGTGCTTCTTGCATGGTCAGTCTTGTATTATATTCTTCCTTCC
AGAATCCAGAGCGGCCCTGGCGGTCGCGGAGGGGAAGGCCCAGTAACCGAAAGGAAGAAA
GATAGCCCCACCCCTGATGTGTTTGGAAGGAAAGGGCGCGTGTTAGCTGATGTGACGTTA
CACCGTAGAATTATCATCGTTCGTGATAATAATGATTCGACCAGAACCTCTATTGTCATC
GTCCTGTTGCCATTGGGTAGTGTACTCTGTATCTGAACCTGTTTTACTCCGAGGAACCAA
ACTGCTATGGTGATATATGTCAATGTAAATCATGCATGTCGATG

Homology of Contig U35_14804 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g62460.3	706	1e-149	protein\|ZOS1-16 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi2g54670.2	806	7e-156
Arabidopsis v10	AT2G37650.1	718	2e-94	GRAS family transcription factor \| chr2:15792623-15794779 FORWARD LENGTH=718