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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5557_PI390587928Hv_44K_v2TTACTAGCATGCAACTTGAATTTGTACAACCTTTGTCTTCTATATATCGACTGTGCTACA806GeneList: yellow
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.2661.7321.1690.8080.2690.396
Raw 1238.2371471.381878.290973.219111.053181.376



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_18817.19108e-25833 - 89210060 / 60plus
Harvest35U35_148178823e-25807 - 86610060 / 60plus



Contig Sequence (882 bp)

>U35_14817 882 Hv_44K_v2
GGGGACCGCAGCCGCCACACACGAACCCCGGGACGAAGCAGATCGGCGGCGCGTCACTCC
AGTCACCGGTGAGGATAAATGGCGACGGTTTCGGATTCTCTGGTCTGGGAGCTGGTCAGG
AAGAACAACTGCTTCCTGATCAAGCAGTTCGGCAACAGCAACGCCAAGGTTCAGTTCAGC
AAGGAGCCCAACAACCTCTACAATGTCCACTCCTACAAGTACTCTGGCCTGGCAAACAAG
AAGACTGTGACGGTGCAGCCTGCTGCTGAGAAGGAGATGACTGTGGTCCTCTCCACAACC
AAGTCAAAGAAGCAGAACAAGCCTGCGGCCTTCACCCACAAGACTGTCATGCGCAAGGAG
TTCCGCAAGATGGCCAAGGCTGTCAAGAACCAGGTCAGTGACAACTACTACAGGCCTGAC
TTGACCAAGCCTGCTCTTGCAAGACTGAGCGCAGTTTACCGCAGCCTCCAGGTTGCCAAG
TCTGGTGTCAAGAAGAAGAACAGGCAGTAAGCACTGAGGGGCTAGTGAGCTTATTTTGTG
GATGCGTTGGTTTATGTTTCCGACTTTTTAGATTTGTTCTAAGAGTATGGAGGTTGAATA
TGATGAATGGTGTGCTTGTATACCGGCACAAGTATTCTCACTAGGTTCTATATCTGTACC
CATGACTGTTGCGAAGCCTCTTAATCATTTCCACCACTTTTGGCTTTCCAAAAAAAAAAA
AAAAAAATGATCTTTATTCTTGAGCTGCTTGGAGTGATGCCGATGCTTGTTTTTCTGAAC
TTATAGAAGGGTATATGTGTGTTTGGTTACTAGCATGCAACTTGAATTTGTACAACCTTT
GTCTTCTATATATCGACTGTGCTACAAAAAAAAAAAAAAAAA



Homology of Contig U35_14817 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g51020.11464e-84protein|60S ribosomal protein L28-1, putative, expressed
Brachypodium v1_2Bradi2g47760.11461e-89
Arabidopsis v10AT2G19730.11432e-63Ribosomal L28e protein family | chr2:8511752-8512995 FORWARD LENGTH=143