barSeed - Barley Seed Development Database

Probe CUST_5552_PI390587928

Source Contig U35_14822

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5552_PI390587928	Hv_44K_v2	CTATCGCCAATTGGAGATTCGTGCAACATTTTTTAGTTTTGTCAAAATTGTCTTGTCCTA	825	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367074	983	2e-24	809 - 868	100	60 / 60	plus	ABC02768 ABC02769
MLOC	MLOC_55453.1	1123	7e-23	81 - 140	98	59 / 60	minus	ABC02768 ABC02769
JLOC1	JLOC1_35775.1	1254	4e-23	212 - 271	98	59 / 60	minus
Harvest21	ABC02770	986	3e-25	779 - 838	100	60 / 60	plus
Harvest21	ABC02769	790	1e-23	625 - 684	98	59 / 60	plus	ABC02769
Harvest35	U35_14822	1035	3e-25	826 - 885	100	60 / 60	plus
Harvest35	U35_14823	977	1e-23	806 - 865	98	59 / 60	plus

Contig Sequence (1035 bp)

>U35_14822 1035 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGGATACTCGAAGCATCAGCGCAGTAGCAAGCCATGGCCAA
CGCAATGTTGCTCCCTGTCCTCATCTCCTTCCTCGTCCTGCCCTTCTCCGCCATGGCCCT
GACCCAGGACTTCTGCGTCGCCGACCTGTCCTGCAGCGACACGCCGGCGGGGTACCCGTG
CAAGACCGGCGTCGGCGCGGGGGACTTCTACTACCACGGCCTCGCCGCCGCGGGCAACAC
CAGCAACCTCATCAAGGCGGCCGTAACCCCGGCCTTCGTCGGCCAGTTCCCCGGCGTGAA
CGGGCTCGGCATCTCTGCGGCGAGGCTCGACATCGCCGTCGGCGGCGTGGTGCCGATGCA
CACCCACCCGGCCGCCTCCGAGCTGCTCTTCGTCACCGAGGGCACCATCCTCGCCGGCTT
CATCAGCTCCTCCTCCAACACCGTCTACACAAAGACGCTCTACAAGGGCGACATCATGGT
GTTCCCACAGGGCCTGCTCCACTACCAGTACAACGGCGGGGGCTCCTCGGCCGTCGCCCT
CGTCGCCTTCAGCGGCCCCAACCCCGGCCTGCAGATCACCGACTACGCGCTCTTCGCCAA
CAACCTCCCGTCCGCCGTCGTCGAGACCGTCACCTTCTTGGACGACGCGCAGGTCAAGAA
GCTCAAGTCCGTGCTCGGCGGCAGCGGCTGATCAAGCTCTCTGCAAGGTGGTTTCTGTTG
GTGTCACCGTGTGGGATTAACTAGACGATTACACCGCCAGAGATGGTTTTCTACCTCCAC
CGCGTGCATGTTATGTTATACAGTGTGCGCGCACGCATCCATCGTCTATCGCCAATTGGA
GATTCGTGCAACATTTTTTAGTTTTGTCAAAATTGTCTTGTCCTAAATTATTATTGTATA
ATGTTTTGTTGAGATTTTTTTCTTCTTCTTTCAAAATGTATCATAATCTTTCACCGCGTA
CCAATATAACAGAGATTGTGTAAAAAAAAAAAAAAAAATTACTCTTATAAATTTTTAATA
CAATACAGACGCAAG

Homology of Contig U35_14822 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g35760.1	214	1e-123	protein\|Cupin domain containing protein, expressed
Brachypodium v1_2	Bradi3g37680.1	215	5e-126
Arabidopsis v10	AT1G72610.1	208	9e-70	\| Symbols: GLP1, ATGER1, GER1 \| germin-like protein 1 \| chr1:27339302-27339928 REVERSE LENGTH=208