barSeed - Barley Seed Development Database

Probe CUST_5551_PI390587928

Source Contig U35_14823

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5551_PI390587928	Hv_44K_v2	CGCCAATTGGAGATTCGTGCAACATTTTCTAGTTTTGTCAAAATTGTCTTGTCCTAAATT	809	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55453.1	1123	2e-24	77 - 136	100	60 / 60	minus	ABC02768 ABC02769
MLOC	AK367074	983	7e-23	813 - 872	98	59 / 60	plus	ABC02768 ABC02769
JLOC1	JLOC1_35775.1	1254	8e-25	208 - 267	100	60 / 60	minus
Harvest21	ABC02769	790	3e-25	629 - 688	100	60 / 60	plus	ABC02769
Harvest21	ABC02770	986	1e-23	783 - 842	98	59 / 60	plus
Harvest35	U35_14823	977	3e-25	810 - 869	100	60 / 60	plus
Harvest35	U35_14822	1035	1e-23	830 - 889	98	59 / 60	plus

Contig Sequence (977 bp)

>U35_14823 977 Hv_44K_v2
ATACCCAACATTCAGCAGAGCAGGCTAGCCCAGAATGGCCAACGCAATGTTGCTCCCTGT
GCTTATCTCCTTCCTCATCCTGCCCTTCTCCGCCCTGGCCCTGACCCAGGACTTCTGCGT
GGCCGACCTGGCATGCCCCGACACGCCCGCTGGGTACCCGTGCAAGCCGGGCGTCGGCGC
GGGCGACTTCTACTACCACGGCCTGGCCACCGCCGGCAACACCAGCAACCTCATCAAGGC
GGCCGTCACACCGGCCTTCGTCGGCCAGTTCCCCGGCGTGAACGGGCTCGGCATCTCCGC
CGCCAGGCTCGACATCGCCGTCGGCGGCGTCGTGCCGCTGCACACCCACCCGGCCGCCTC
CGAGCTGCTCTTCGTCACCGAGGGCACCATCCTCGCCGGCTTCATCAGCTCCTCCTCCAA
CACGGTCTACACAAAGACGCTCTACAAGGGCGACATCATGGTCTTCCCACAGGGCCTGCT
CCACTACCAGTACAACGGCGGGGGCTCCTCGGCCGTCGCCCTCGTCGCCTTCAGCGGCCC
CAACCCCGGCCTGCAGATCACCGACTACGCGCTCTTCGCCAACAACCTGCCGTCCGCCGT
CGTCGAGACCGTCACCTTCTTGGACGACGCGCAGGTCAAGAAGCTCAAGTCCGTGCTCGG
CGGCAGCGGCTAATCAAGCTCTCTGCAAGGTGGTTTCTGTTGGTGTCACCGTGTGGGATT
AACTAGACGATTACACCGCCAGAGATGGTTTTCTACCTCCACCGTGCATGTTATGTTATA
TAGTGTGCGTGCACGCATCCATCGTCTATCGCCAATTGGAGATTCGTGCAACATTTTCTA
GTTTTGTCAAAATTGTCTTGTCCTAAATTATTATTGTATAATGTTTTGTTGAGATTTTTT
CTTCTTCTTTCAAAATGTATCATAATCTTTCACCGCGTACCAATATAACAGAGATTGTGT
ATAAAAAAAAAAAAAAA

Homology of Contig U35_14823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g35760.1	214	4e-123	protein\|Cupin domain containing protein, expressed
Brachypodium v1_2	Bradi3g37680.1	215	3e-127
Arabidopsis v10	AT5G20630.1	211	2e-71	\| Symbols: GLP3, GLP3A, GLP3B, ATGER3, GER3 \| germin 3 \| chr5:6975315-6975950 REVERSE LENGTH=211