barSeed - Barley Seed Development Database

Probe CUST_5550_PI390587928

Source Contig U35_14824

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5550_PI390587928	Hv_44K_v2	GCTTGTGAGGTCAACTCCGAGTCTGTTTCAAGTTGTGTTTAATTTTTCATATCAATTTCA	782	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.438	2.084	4.782	3.142	0.500	0.263
Raw	36.967	269.956	540.056	526.286	31.562	18.476

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249015.1	940	2e-24	795 - 854	100	60 / 60	plus	ABC02768 ABC02769
MLOC	MLOC_9957.1	783	2e-24	98 - 157	100	60 / 60	minus	ABC02768 ABC02769
MLOC	MLOC_9957.2	755	2e-24	98 - 157	100	60 / 60	minus	ABC02768 ABC02769
MLOC	MLOC_9957.3	1091	2e-24	98 - 157	100	60 / 60	minus	ABC02768 ABC02769
JLOC1	JLOC1_6475.1	900	8e-25	82 - 141	100	60 / 60	minus
Harvest21	ABC02768	876	3e-25	733 - 792	100	60 / 60	plus	ABC02768
Harvest21	ABC02767	647	1e-23	88 - 147	98	59 / 60	minus
Harvest35	U35_48123	417	3e-25	151 - 210	100	60 / 60	minus
Harvest35	U35_14824	928	3e-25	783 - 842	100	60 / 60	plus

Contig Sequence (928 bp)

>U35_14824 928 Hv_44K_v2
TTCAACGAGTATATAGCCTTGGCCGTCGAGCACTGTTGGCCTGGATACTCGAAGCATCAG
CGCAGTAGCAAGCCATGGCCAACGCAATGTTGCTCCCTGTCCTCATCTCCTTCCTCGTCC
TGCCCTTCTCCGCCATGGCCCTGACCCAGGACTTCTGCGTCGCCGACCTGTCCTGCAGCG
ACACGCCGGCGGGGTACCCGTGCAAGACCGGCGTCGGCGCGGGGGACTTCTACTACCACG
GCCTCGCCGCCGCGGGCAACACCAGCAACCTCATCAAGGCGGCCGTAACCCCGGCCTTCG
TCGGCCAGTTCCCCGGCGTGAACGGGCTCGGCATCTCTGCGGCGAGGCTCGACATCGCCG
TGGGCGGCGTCGTGCCGATGCACACCCACCCGGCCGCCTCTGAGCTCCTCTTCGTAACCG
AGGGCACCATCTTGGCGGGCTTCATCAGCTCCTCCTCCAACACCGTGTACACCAAGACGC
TCTACAAGGGCGACATCATGGTGTTCCCCCAGGGCCTGCTCCACTACCAGTACAACGGTG
GCAGCTCCGCGGCGGTAGCGCTCGTTGCGTTCAGCGGCCCCAACCCAGGCCTCCAGATCA
CTGACTACGCGCTCTTCGCCAACAACCTGCCATCCGCCGTGGTTGAGAAGGTCACCTTCT
TGGACGACGCGCAGGTGAAGAAGCTCAAGTCCGTGCTCGGCGGCAGCGGCTAATTAAGCA
GTTCTCAGCAAAGGTCGTCGTGGTGTCAGCGTGTCGGTTTAATTTGATGCATGTGTTCGT
GCGCTTGTGAGGTCAACTCCGAGTCTGTTTCAAGTTGTGTTTAATTTTTCATATCAATTT
CATTTGATGATTGTCAATGGCACATTTTTTTTCAAATGATAACGCCCACACGTGGCATGT
TTGCATTTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g35760.1	214	7e-126	protein\|Cupin domain containing protein, expressed
Brachypodium v1_2	Bradi3g37680.1	215	2e-126
Arabidopsis v10	AT1G72610.1	208	4e-70	\| Symbols: GLP1, ATGER1, GER1 \| germin-like protein 1 \| chr1:27339302-27339928 REVERSE LENGTH=208