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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_5549_PI390587928Hv_44K_v2GCTGGTGATTGGCTATCTTAACATTTCGGATCGGCATCTTTAGAACACTTATATCTAAGA819GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6081.3281.1630.9120.3130.316
Raw 3015.7473865.4673001.3533707.057445.573491.630



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
JLOC1JLOC1_10433.110378e-25783 - 84210060 / 60plus
Harvest35U35_148258943e-25820 - 87910060 / 60plus



Contig Sequence (894 bp)

>U35_14825 894 Hv_44K_v2
CTCCGGAAAACCCTAGTCCCTCGCAGCCGCAGCGGCGCGCACACCTCTCCCTCCTTCGTG
AAGACAACGCCGCCGGCGGCAAGAGCACAGGATGGCGACCGTCCCCGCTCCCGCAGCCGA
GACCGCGGCCTCCACGGCGCGCACGGTCAAGGATGTGAACCCCCACGAGTTCGTCAAGGC
CTACTCCGCGCACCTCAAGCGCTCCGGCAAGATGGAGCTTCCCGAGTGGGTTGACATTGT
CAAGACTGCAAGGTTCAAGGAGCTGCCGCCTACTGACGCTGACTGGTACTACATCAGGGC
TGCCTCGATGGCAAGGAAGATCTACCTGAGGCAGGGAATTGGGATTGGTGGATTCCAGAA
GATCTATGGTGGCCGTCAGAGGAACGGTTCACGCCCCCCACACTTCTGCAAGAGCAGTGG
TGCTGTTTCCCGCAACATCCTTCAGGAGTTGCAGAAGATGGGCATCATTGATGTCGACCC
CAAGGGTGGAAGGCTCATCACCTCCCAGGGAAGGCGTGATCTTGACCAGGTTGCTGGAAC
TGTTCCTGCTGAATTCTGATCAGTTGAAGTCCCATCTATGAAATTGTGTTCCGTAGTAGG
ATTTGGCTACAGTTTTGAATTATGATACCCTCCCTGTGTTTGTTATGCAAGACTTCGTTG
AAGTAGATCGCATGCTATTATGGTACAATGGTTAATTGTCTGAGTTTTTAATTATCTGCC
CGCCTGGGAGAATCTTTATGCTTTAAAAAAAAAAAAAAAAAGTTCTTGTGATAAAGTTCG
ATTTCTGTCCAAAAAAAAAAAAAAAAATGTGAAATTGGTGCTGGTGATTGGCTATCTTAA
CATTTCGGATCGGCATCTTTAGAACACTTATATCTAAGAAAAAAAAAAAAAAAG



Homology of Contig U35_14825 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g31090.11472e-86protein|40S ribosomal protein S19, putative, expressed
Brachypodium v1_2Bradi4g08690.11542e-85
Arabidopsis v10AT5G61170.11433e-69Ribosomal protein S19e family protein | chr5:24611158-24612202 FORWARD LENGTH=143