- Probe CUST_5542_PI390587928
- Source Contig U35_26803
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5542_PI390587928 | Hv_44K_v2 | TGATGAAACCACAAGTGGTGTGGTAAGGATTTCAATAATGATCCATATGAAAAGTGATGA | 348 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.129 | 2.392 | 1.353 | 0.664 | 0.224 | 0.400 |
| Raw | 3225.917 | 2851.782 | 1433.540 | 1028.035 | 135.522 | 259.687 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44814.2 | 505 | 2e-24 | 433 - 492 | 100 | 60 / 60 | plus | ABC25366 |
| JLOC1 | JLOC1_29071.1 | 406 | 2e-21 | 353 - 406 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC25366 | 434 | 3e-25 | 27 - 86 | 100 | 60 / 60 | minus | ABC25366 |
| Harvest35 | U35_26803 | 434 | 3e-25 | 349 - 408 | 100 | 60 / 60 | plus |
Contig Sequence (434 bp)
>U35_26803 434 Hv_44K_v2 CACAACGATCAGCAACTCTTTCCTTCAGCACAAGAGCTAGATAAGATGAGGACTACCCAT ATGTTGCTTCTAGGCCTCAGTTTCCTTGTGTTCGCATCGGATGCGGTAATGGAAGCGTCA ACAGACGGTAGCATCAAACTCTTCACATGTGTGGCAAAAATTCTCCCATCGCCAACATGT GACAACCAAACTTGTGATGCGATGTGCAAGTACCGTACAGGGCAACAGAAGTCTGGTGTG TGTATTGCCGAGGGATGCAAGTGCACATTGTGCATATACAACCCTCCACGATAATCACGA CATGTGTGCTAACTAGATTATATGGGATGGTTTCTTCCATGAACAACGTGATGAAACCAC AAGTGGTGTGGTAAGGATTTCAATAATGATCCATATGAAAAGTGATGAATTTGTTCCAAA AAAAAAAAAAAAAA
Homology of Contig U35_26803 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |