barSeed - Barley Seed Development Database

Probe CUST_5538_PI390587928

Source Contig U35_26808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5538_PI390587928	Hv_44K_v2	CTTTGTATGCACGTGGATGCAACTTGATAGTTGGATATAAGAGGTTACTTTAATATGGTT	548	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.375	0.621	1.047	1.603	0.934	1.447
Raw	121.851	315.348	465.188	1114.598	229.389	385.983

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC25388	625	3e-25	549 - 608	100	60 / 60	plus	ABC25388
Harvest21	ABC20326	686	2e-22	16 - 70	100	55 / 55	minus	ABC20326
Harvest35	U35_26808	625	3e-25	549 - 608	100	60 / 60	plus
Harvest35	U35_18444	1422	2e-22	1353 - 1407	100	55 / 55	plus

Contig Sequence (625 bp)

>U35_26808 625 Hv_44K_v2
GCACGAGGGCCGGAAGAAAAATCCGCGATAGAAAGAGGCGGAACTGTTGACGAAGCCTGG
GAACGAAACAAAGAAGCGTCGAAAGGGGAGGGCGAGAGGAAGGAAGGGGAGGGGCGAGAG
ATGGGGATCCGGTTCGTGCTGCTGGTGAACAAGCAGGGGCAGACGCGGCTGGCGCAGTGC
TACGAGCACCTCTCCCTCGACGAGCGCCGCGCCCTTGAGGGCGAGATCATCCGCAAGTGC
CTCGCCCGCACTGACCAGCAGTGCTCTTTCGTGGAGCACCGTAACTACAAGGTCGTCTAT
AGGCGCTACGCCTCCCTCTTCTTCCTCGTCGGCGTGGACAACGATGAGGCGTCCGACAGG
TTCTGCACCTGCATGCTCTTCTCCATATTCCATGAGGTATTGCATCAGATTACCTTCACT
TCACGGGAAGCTTGGCAAATATTGATGAAATGCTTGAAGATGATTTCTTGTAACATGGGT
TGTATTGAAACTATTGTAGTATATGAAACTTTGTATGCATGTGGATGAAACTGGTGTAAT
ATATGAAACTTTGTATGCACGTGGATGCAACTTGATAGTTGGATATAAGAGGTTACTTTA
ATATGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_26808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None