- Probe CUST_5534_PI390587928
- Source Contig U35_14833
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_5534_PI390587928 | Hv_44K_v2 | ACTTGATGCTGTACCTTGTTGCCTACGTGATGCACACAATTACTGCTAGATCATAAAAAA | 611 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.405 | 5.871 | 1.419 | 0.669 | 0.186 | 0.164 |
| Raw | 3820.817 | 4488.997 | 891.341 | 718.720 | 60.725 | 63.393 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_53469.1 | 1168 | 3e-21 | 905 - 958 | 100 | 54 / 54 | plus | ABC02247 ABC02250 |
| MLOC | MLOC_53469.2 | 832 | 3e-21 | 739 - 792 | 100 | 54 / 54 | plus | ABC02247 ABC02250 |
| JLOC1 | JLOC1_34356.1 | 1063 | 2e-21 | 786 - 839 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC35358 | 184 | 1e-23 | 116 - 175 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC39634 | 522 | 6e-22 | 43 - 96 | 100 | 54 / 54 | minus | |
| Harvest21 | ABC02252 | 367 | 6e-22 | 285 - 338 | 100 | 54 / 54 | plus | |
| Harvest21 | ABC02251 | 580 | 6e-22 | 84 - 137 | 100 | 54 / 54 | minus | |
| Harvest21 | ABC02247 | 708 | 6e-22 | 576 - 629 | 100 | 54 / 54 | plus | ABC02247 |
| Harvest21 | ABC02246 | 1040 | 6e-22 | 27 - 80 | 100 | 54 / 54 | minus | |
| Harvest35 | U35_14833 | 762 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43214 | 555 | 6e-22 | 27 - 80 | 100 | 54 / 54 | minus | |
| Harvest35 | U35_14834 | 859 | 6e-22 | 690 - 743 | 100 | 54 / 54 | plus |
Contig Sequence (762 bp)
>U35_14833 762 Hv_44K_v2 AACAGCATCCGCCGGCCGATCCCCGCAGCTCCAGAAGCAGAAGCAGGACACTCCTCCCAC CGCACAGCTCGACCGCAATGGCGTCGCTCGTCGCCGTCCAGCCGGCCGCCGTGAAGGGCC TCTCCGGCAGCTCCATCTCCGGCCGCAAGCTCGCCGTCCGGCCCTCCTCCGCCGCCGTCT CCCGCTCCACCCGCAGGGCTCGCGGGGCGGCGGTGGTGGCCAAGTACGGGGAGAAGAGCG TGTACTTCGACCTGGACGACATCGCCAACACGACGGGGCAGTGGGACCTGTACGGCAGCG ACGCGGCGTCGCCCTACAACGGCCTGCAGAGCAAGTTCTTCAACACCTTCGCCGCGCCCT TCACCAAGCGCGGCCTGCTGCTCAAGTTCCTGCTCATCGGCGGCGGCTCCCTGGTCGCCT ACGTCAGCGCATCCGCCTCCCCCGACCTGCTCCCCATCAAGAAGGGGCCCCAGCTGCCGC CCACCCCGGGACCACGCGGCAAGATCTAAATCTAATCCTCGCCTCGCCTCGCCTCGTGCT TGTGTACCATGGATCCCGTCTGATCTCATGGATCGGAATCGGATCCCCCGTATCCATGTC TTTCTGTTGATACTTGATGCTGTACCTTGTTGCCTACGTGATGCACACAATTACTGCTAG ATCATAAAAAAAAAATGCTCTTTAATCCCTTTCGTTGTACCGAAAAAAAAAAATGTGGTT TTAATCACTTGTCCAGTGTGCGTACAAAAAAAAAAAAAAAAA
Homology of Contig U35_14833 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g48630.2 | 143 | 9e-57 | protein|expressed protein |
| Brachypodium v1_2 | Bradi2g16810.1 | 146 | 8e-55 | |
| Arabidopsis v10 | None |