barSeed - Barley Seed Development Database

Probe CUST_5533_PI390587928

Source Contig U35_14834

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5533_PI390587928	Hv_44K_v2	TTTTAATCACTTGTCCAGTGTGCGTACAGTGCCGATCGATCCATCATATGCATGTCACTC	779	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	8.558	6.248	1.432	0.730	0.190	0.246
Raw	310.910	379.739	71.336	59.027	3.290	6.154

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53469.1	1168	2e-24	995 - 1054	100	60 / 60	plus	ABC02247 ABC02250
JLOC1	JLOC1_34356.1	1063	8e-25	876 - 935	100	60 / 60	plus
Harvest35	U35_14834	859	3e-25	780 - 839	100	60 / 60	plus

Contig Sequence (859 bp)

>U35_14834 859 Hv_44K_v2
AGAAGCAGGGCACTCCTCCCACCGCACAGCTCGACCGCAATGGCGTCGCTCGTCGCCGTC
CAGCCGGCCGCCGTGAAGGGCCTCTCCGGCAGCTCCATCTCCGGCCGCAAGCTCGCCGTC
CGGCCCTCCTCCGCCGCCGTCTCCCGCTCCACCCGCAGGTATACGAACTTACACACACAC
GGCTTAGTAAACGCATGACACGCCACGCACACCACCGAGAGAGCAACGGAGCGTGATTCA
CTCAAGCTCCGTCGCACGCCATGGACGCATGCAGGGCTCGCGGGGCGGCGGTGGTGGCCA
AGTACGGGGAGAAGAGCGTGTACTTCGACCTGGACGACATCGCCAACACGACGGGGCAGT
GGGACCTGTACGGCAGCGACGCGGCGTCGCCCTACAACGGCCTGCAGAGCAAGTTCTTCA
ACACCTTCGCCGCGCCCTTCACCAAGCGCGGCCTGCTGCTCAAGTTCCTGCTCATCGGCG
GCGGCTCCCTGGTCGCCTACGTCAGCGCATCCGCCTCCCCCGACCTGCTCCCCATCAAGA
AGGGGCCCCAGCTGCCGCCCACCCCGGGACCACGCGGCAAGATCTAAATCTAATCCTCGC
CTCGCCTCGCCTCGTGCTTGTGTACCATGGATCCCGTCTGATCTCATGGATCGGAATCGG
ATCCCCCGTATCCATGTCTTTCTGTTGATACTTGATGCTGTACCTTGTTGCCTACGTGAT
GCACACAATTACTGCTAGATCATTTGCTCTTTAAAAAAAAAAAAAAAAACGCTGTGTGGT
TTTAATCACTTGTCCAGTGTGCGTACAGTGCCGATCGATCCATCATATGCATGTCACTCG
GCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14834 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None