barSeed - Barley Seed Development Database

Probe CUST_5529_PI390587928

Source Contig U35_14838

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5529_PI390587928	Hv_44K_v2	GCATCAGAGCATGTGTTCCGGTTTTGCTTCGGATGGAGAAGTGTATGTGAAGTTGTCAAA	1532	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.672	2.532	1.157	0.848	0.481	0.525
Raw	1608.777	2494.226	957.432	1093.054	223.132	261.500

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359887	1606	2e-23	1508 - 1565	100	58 / 58	plus	ABC02262 ABC02263 ABC26932
MLOC	MLOC_49467.1	958	2e-23	192 - 249	100	58 / 58	minus	ABC02262 ABC02263 ABC26932
JLOC1	JLOC1_31665.1	1782	1e-23	1568 - 1625	100	58 / 58	plus
Harvest21	ABC02262	1403	4e-24	1290 - 1347	100	58 / 58	plus	ABC02262
Harvest35	U35_14838	1648	3e-25	1533 - 1592	100	60 / 60	plus

Contig Sequence (1648 bp)

>U35_14838 1648 Hv_44K_v2
TCGAGCACTGTTGGCCTACTCTGGCTGCATATACGCCGCTCCCTCTCCGTTCCCCCAAAC
TCTTCGCTCCCGTTCCGCGCTGTCTGTCACTCACGCTCCTCGGAAGATGGCGTCCGCCAT
GGAGCTCTCCCTCCTCAACCCCGCAATGCACCACTACGGCATCGCCGCCAAAACGGCCTC
CCACCTCCCGGTTGTCCCCGCACGCCGGGCCTCTTCCGGCGCCGTCCGCTTCCGCGTGAG
GGCCGCCGCCGCGGCGCCGCCCGCGCCCGCCGCGAAGCCCGGCTCACCGAAGAAGCGGGG
CAAGACGGAGGTCAACGAGTCTCTGCTCACGCCGCGGTTCTACACCACGGACTTCGACGA
GATGGAGCAGCTCTTCAACGCCGAGATTAACAAGCAGCTCAACCAGGACGAGTTCGACGC
GCTGCTGCAGGAGTTCAAGACGGACTACAACCAGACCCACTTCATCCGCAACCCCGAGTT
CAAGGAGGCCGCTGACAAGATGCAGGGCCCGCTCCGCCAGATCTTCGTCGAGTTCCTCGA
GCGCTCCTGCACCGCCGAGTTCTCCGGGTTCCTCCTCTACAAGGAGCTCGGTCGCAGGCT
CAAGAAAACTAACCCCGTGGTGGCTGAGATCTTCTCGCTCATGTCCAGGGACGAGGCCCG
GCACGCTGGGTTCTTGAACAAGGGGCTATCCGACTTCAACCTGGCTCTGGACCTCGGGTT
CTTGACCAAGGCTAGGAAGTACACCTTCTTCAAGCCAAAGTTCATCTTCTACGCCACGTA
CCTGTCCGAGAAGATCGGCTACTGGAGGTACATCACCATCTTCAGGCACCTCAAGGCCAA
CCCGGAGTACCAGGTGTACCCCATCTTCAAGTACTTCGAGAACTGGTGCCAGGACGAGAA
CCGGCACGGTGATTTCTTCTCTGCGCTGCTAAAGGCGCAGCCGCAGTTCCTCAATGACTG
GAAGGCCAAGCTCTGGTCACGCTTCTTCTGCCTCTCGGTGTATATAACCATGTACCTGAA
TGACTGCCAACGTAGTGCCTTCTATGAAGGAATCGGTCTCAACACCAAAGAATTCGACAT
GCATGTCATCTATGAGACCAACCGCACAACGGCGAGGATCTTCCCTGCTGTACCGGATGT
TGAGAACCCTGAATTCAAGAGGAAGTTAGACAGGATGGTAGATATCAACCTGAAGATCAT
TTCTATAGGAGAGTCCAACGACTTGCCCCTGGTGAAGAACCTGAAGAGGGTTCCTCTTAT
TGCCCAACTAGTGTCTGAGATCATCGCTGCGTACCTCATGCCCCCAATCGAGTCTGGCTC
CGTTGATTTTGCCGAATTTGAGCCCAAGCTTGTCTACTGAATTTGTCGAAAAAGGATTCA
TCTCTGCCTATCTTTACAAACATAATGATGCATCATGCTCCTCGAGAGTCTCTAAATGAG
CACAGGGTCCATGGTTAATTAACATGATCTACATCTTCCTGTGCTCACCTGTAAAGTATT
AAAACTCGGCAACATGTAAGTGGCAGTGAACTGCATCAGAGCATGTGTTCCGGTTTTGCT
TCGGATGGAGAAGTGTATGTGAAGTTGTCAAAAAAAAAAAAAAAAAACTTTTAACACTTC
TTCTTCAGTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14838 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g17170.1	409	protein\|magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g10770.1	412
Arabidopsis v10	AT3G56940.1	409	\| Symbols: CRD1, CHL27, ACSF \| dicarboxylate diiron protein, putative (Crd1) \| chr3:21076594-21078269 FORWARD LENGTH=409